View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9863_low_4 (Length: 533)
Name: NF9863_low_4
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9863_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Complemental strand, 45504773 - 45504258
Alignment:
| Q |
1 |
gcaaaactctcatcttcgaaactagaaccatagatactaactccaccggttccctgcagccaatggaaacacattttgagtgagaagaaacataattacc |
100 |
Q |
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| T |
45504773 |
gcaaaactctcatcttcgaaactagaaccatagatactaactccaccggttccctgcagccaatggaaacacattttgagtgagaagaaacataattacc |
45504674 |
T |
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| Q |
101 |
ttcattgaaacaaatacatggcaagtggaagtaaatgttcacattaacatataaacaaatataacaaaggctattcgcatatacaagcaaacaaacacat |
200 |
Q |
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| T |
45504673 |
ttcattgaaacaaatacatggcaagtggaagtaaatgttcacattaacatataaacaaatataacaaaggctattcgcatatacaagcaaacaaacacat |
45504574 |
T |
|
| Q |
201 |
gcaacaaatctcacatttccctcggtgaagtcccctccctgaatcatgaattctttgattatacgatggaaggagcatcctttgtaaccatatcctttat |
300 |
Q |
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| T |
45504573 |
gcaacaaatctcacatttccctcggtgaagtcccctccctgaatcatgaattctttgattatacgatggaaggagcatcctttgtaaccatatcctttat |
45504474 |
T |
|
| Q |
301 |
ctcctgcaaaaagattattgaagccaaactttaaaatgctatgttacacaatttattcnnnnnnngtaaaccaagtacaaggacaaaggtgcagaaaaat |
400 |
Q |
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| T |
45504473 |
ctcctgcaaaaagattattgaagccaaactttaaaatgctatgttacacaatttattc-aaaaaagtaaaccaagtacaaggacaaaggtgcagaaaaat |
45504375 |
T |
|
| Q |
401 |
atggttgcttgcctgtgcacaaagcacggaaattttcaactgttttaggagcaacctctccaaacaagcccaaaacaattctgcccaaagattcaccccc |
500 |
Q |
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| T |
45504374 |
atggttgcttgcctgtgcacaaagcacggaaattttcaactgttttaggagcaacctctccaaacaagcccaaaacaattctgcccaaagattcaccccc |
45504275 |
T |
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| Q |
501 |
agcttctacgtcaaaga |
517 |
Q |
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| T |
45504274 |
agcttctacgtcaaaga |
45504258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 210 - 308
Target Start/End: Complemental strand, 38220724 - 38220626
Alignment:
| Q |
210 |
ctcacatttccctcggtgaagtcccctccctgaatcatgaattctttgattatacgatggaaggagcatcctttgtaaccatatcctttatctcctgca |
308 |
Q |
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||||||||||| || |||||||||||||||||||||||||| ||||||||||| |||||||||| | | ||||||||||||||||||| ||||||||| |
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| T |
38220724 |
ctcacatttccttctgtgaagtcccctccctgaatcatgaaatctttgattatgcgatggaaggtggaatctttgtaaccatatcctttctctcctgca |
38220626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 393 - 464
Target Start/End: Complemental strand, 38220532 - 38220461
Alignment:
| Q |
393 |
agaaaaatatggttgcttgcctgtgcacaaagcacggaaattttcaactgttttaggagcaacctctccaaa |
464 |
Q |
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|||||||| || |||||| |||||||||||||| |||||||||||||||||||| ||| |||| |||||||| |
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| T |
38220532 |
agaaaaatttgattgcttacctgtgcacaaagctcggaaattttcaactgttttgggaacaacatctccaaa |
38220461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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