View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9863_low_41 (Length: 259)

Name: NF9863_low_41
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9863_low_41
NF9863_low_41
[»] chr5 (10 HSPs)
chr5 (19-242)||(13447078-13447301)
chr5 (19-242)||(13419527-13419750)
chr5 (19-242)||(13426418-13426641)
chr5 (20-237)||(13413183-13413400)
chr5 (18-242)||(13388997-13389221)
chr5 (130-242)||(13385176-13385288)
chr5 (131-240)||(13454143-13454252)
chr5 (23-77)||(13454035-13454089)
chr5 (18-84)||(13393562-13393628)
chr5 (169-242)||(13393404-13393477)
[»] chr4 (2 HSPs)
chr4 (18-97)||(47601348-47601427)
chr4 (200-240)||(47601530-47601570)


Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 13447078 - 13447301
Alignment:
Q  19 atcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttaccattgaatgtttga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447078 atcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttaccattgaatgtttga 13447177  T
Q  119 gtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447178 gtatatttggtgcagtaattctcaatatcgtcggcacaattttcgcaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaa 13447277  T
Q  219 acttttttactttgcttcccacct 242  Q
    ||||||||||||||||||||||||    
T  13447278 acttttttactttgcttcccacct 13447301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 13419527 - 13419750
Alignment:
Q  19 atcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttaccattgaatgtttga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||  |||||||||||| ||||  ||    ||||        
T  13419527 atcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccatatgtgacggtgccatcacgatactttgcaccacatgtgact 13419626  T
Q  119 gtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaa 218  Q
    ||| || | | |||||||||||||| |||||| ||||||||||  || ||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  13419627 gtaaatgttgggcagtaattctcaagatcgtcagcacaattttggcatgaacgacatgaatcaaccatgtatcccacaccaactttgtctccaactttaa 13419726  T
Q  219 acttttttactttgcttcccacct 242  Q
    |||||| |||||||||||| ||||    
T  13419727 acttttctactttgcttccaacct 13419750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 13426418 - 13426641
Alignment:
Q  19 atcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttaccattgaatgtttga 118  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||| ||||   ||||||||||| ||||| ||    ||||        
T  13426418 atcaggaatgcgaatcacaaagtgctcatctgcaaccattgagtcggaataacctccatatgtgacgctgccatcacgatacttagcaccacatgtaact 13426517  T
Q  119 gtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaa 218  Q
    || | || || |||||||||||||| ||| || ||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  13426518 gtttgttgggggcagtaattctcaagatcttccgcacaattttcgcatgaacgacatgaatcaaccatgtatcccactcctactttgtctccaactttaa 13426617  T
Q  219 acttttttactttgcttcccacct 242  Q
    |||||| |||||||||||| ||||    
T  13426618 acttttctactttgcttccaacct 13426641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 13413183 - 13413400
Alignment:
Q  20 tcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttaccattgaatgtttgag 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||  || ||||||||| ||||  ||    ||||         
T  13413183 tcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccataagtgacggttccatcacgatacttggcaccacatgtgacta 13413282  T
Q  120 tatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaa 219  Q
     | |||||| |||||||||||||| || |||   ||||| ||  || || ||||||||||||| || ||| || || |||||||||||||||||||||||    
T  13413283 caaatttggggcagtaattctcaagattgtcattacaatcttggcatgatcgacatgaatcaatcaagtagccaacacctactttgtctccaactttaaa 13413382  T
Q  220 cttttttactttgcttcc 237  Q
    ||| |  |||||||||||    
T  13413383 cttctccactttgcttcc 13413400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 13389221 - 13388997
Alignment:
Q  18 catcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttaccattgaatgtttg 117  Q
    ||||||||||| ||| ||| |||| ||| |||||||||| |||||| ||  |||||||||| ||| | || ||||| ||| ||||  ||    ||||       
T  13389221 catcaggaatgtgaaccacgaagttctcatctgcaaccaatgagtcagaataacctccatatgtgctcgttccatcgcgatacttggcaccacatgtgaa 13389122  T
Q  118 agtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaacttta 217  Q
    |||| || |||  |||||||| |||| || |||  ||||||||| ||| || |||||||||||||||||||| || || ||||||||||||||||| ||     
T  13389121 agtaaatgtgggacagtaattttcaagattgtcaacacaattttgacatgatcgacatgaatcaaccatgtagccaacacctactttgtctccaacattg 13389022  T
Q  218 aacttttttactttgcttcccacct 242  Q
    ||||||| |||||||||||||||||    
T  13389021 aacttttctactttgcttcccacct 13388997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 130 - 242
Target Start/End: Complemental strand, 13385288 - 13385176
Alignment:
Q  130 gcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttact 229  Q
    ||||||||| |||| || |||  ||||||||| ||| || |||||||||||||  ||||| || || ||||||||||||||||| || ||||||| ||||    
T  13385288 gcagtaattttcaagattgtcaacacaattttgacacgatcgacatgaatcaattatgtagccaacacctactttgtctccaacattgaacttttctact 13385189  T
Q  230 ttgcttcccacct 242  Q
    |||||||||||||    
T  13385188 ttgcttcccacct 13385176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 240
Target Start/End: Original strand, 13454143 - 13454252
Alignment:
Q  131 cagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttactt 230  Q
    ||||||||||||| ||  ||  ||||||||| ||| ||  |||| |||||||||| | ||||||| |||||| ||||||||||||| |||||||| ||||    
T  13454143 cagtaattctcaagattatcaacacaattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactt 13454242  T
Q  231 tgcttcccac 240  Q
    ||||||||||    
T  13454243 tgcttcccac 13454252  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 13454035 - 13454089
Alignment:
Q  23 ggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccat 77  Q
    |||||||||| ||||||||||||||| | |||||||||||| ||||| |||||||    
T  13454035 ggaatgcgaaacacaaagtgctcgtcggaaaccattgagtcagagaagcctccat 13454089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 13393628 - 13393562
Alignment:
Q  18 catcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgat 84  Q
    ||||||||||| |||  | ||||||||| ||||||||||||||||| ||| | |||||||| |||||    
T  13393628 catcaggaatgtgaactataaagtgctcatctgcaaccattgagtcagagtaccctccatatgtgat 13393562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 13393477 - 13393404
Alignment:
Q  169 acgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttactttgcttcccacct 242  Q
    |||||| |||||||| | | ||||||| || ||||||||||||| ||| ||||| | |||||||||||| ||||    
T  13393477 acgacacgaatcaactaagcatcccacacccactttgtctccaattttgaacttctctactttgcttcctacct 13393404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 47601348 - 47601427
Alignment:
Q  18 catcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacga 97  Q
    |||| |||||| ||| |||||||||||||||| ||||||||||||| ||| ||||||| || ||| | ||||||||||||    
T  47601348 catcgggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacga 47601427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 47601530 - 47601570
Alignment:
Q  200 actttgtctccaactttaaacttttttactttgcttcccac 240  Q
    ||||||||||||||||| ||||||| |||||||||||||||    
T  47601530 actttgtctccaactttgaacttttctactttgcttcccac 47601570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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