View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9863_low_46 (Length: 253)
Name: NF9863_low_46
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9863_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 36 - 234
Target Start/End: Original strand, 41125127 - 41125325
Alignment:
| Q |
36 |
gttatcatgttgtcgcaaacctcagcaatgtgacgctccttcttatatagttcgaattacgcaccgctcttttctgcttccacagtgaaatttctgtgac |
135 |
Q |
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| T |
41125127 |
gttatcatgttgtcgcaaacctcagcaatgtgacgctccttcttatatagtttgaattacgcaccgctcttttctgcttccacagtgaaatttctgtgac |
41125226 |
T |
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| Q |
136 |
tgcaatgcagatctcagcatttccccaggaggttccctcctttccnnnnnnnnggcagttaattctttagtttgtgtttgattgagagcattatttaac |
234 |
Q |
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| T |
41125227 |
tgcaatgcagatctcagcatttccccaggaggttccctcctttccttttttttggtagttaattctttagtttgtgtttgattgagagcattatttaac |
41125325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 41122983 - 41123012
Alignment:
| Q |
1 |
gagatttagagagagggagaaaaataagac |
30 |
Q |
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| T |
41122983 |
gagatttagagagagggagaaaaataagac |
41123012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 39443189 - 39443426
Alignment:
| Q |
1 |
gagatttagagagagggagaaaaataagacagggggttatcatgttgtcgcaaacctcagcaatgtgacgctccttcttatatagttcgaattacgcacc |
100 |
Q |
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| T |
39443189 |
gagatttagagagagggagaaaaataagacagggggttatcatgttgtcgcaaaccttagcagtgtgacgctccttcttatatagtttgaattacgcacc |
39443288 |
T |
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| Q |
101 |
gctcttttctgcttccacagtgaaatttc---tgtgactgcaatgcagatctcagcatttccccaggaggttccctcctttcc----nnnnnnnnggcag |
193 |
Q |
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|||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39443289 |
gctcttttctgcttccacagcgaaatttcttttgtgactacaatgcagatctcagcatttccccaggaggttccctcctttccttttttttttttggcag |
39443388 |
T |
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| Q |
194 |
ttaattctttagtttgtgtttgattgagagcattattt |
231 |
Q |
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| T |
39443389 |
ttaattctttagtttgtgtttgattgagagcattattt |
39443426 |
T |
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