View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9863_low_52 (Length: 242)
Name: NF9863_low_52
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9863_low_52 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 30569084 - 30568860
Alignment:
| Q |
18 |
ctattatttgatagcatgaaactacatatataatcacaaggtaaatataacttacatcattctagtagcagcatctttgtcttttcatgtctgtatggcg |
117 |
Q |
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| T |
30569084 |
ctattatttgatagcatgaaattacatatataatcacaaggtaaatataacttacatcattctagtagcagcatcgttgtcttttcatgtctgtatggcg |
30568985 |
T |
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| Q |
118 |
tcatcactgcgactgaagatatccgtatcatgcagtttcatctctctaaagacagatctgcaataaaataatgcaaatttcatctttaaacttatcaatg |
217 |
Q |
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| T |
30568984 |
tcaccactgcgactgaagatatccgtatcatgcagtttcatctctctaaagacagatctgcaataaattaatgcaaatttcatctttaaacttatcaatg |
30568885 |
T |
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| Q |
218 |
aaagatacaaaaacattggataaat |
242 |
Q |
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| T |
30568884 |
aaagatacaaaaacattggataaat |
30568860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 23 - 201
Target Start/End: Complemental strand, 30572596 - 30572418
Alignment:
| Q |
23 |
atttgatagcatgaaactacatatataatcacaaggtaaatataacttacatcattctagtagcagcatctttgtcttttcatgtctgtatggcgtcatc |
122 |
Q |
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| T |
30572596 |
atttggtaacatgaaactacatatttaatcacaaggtaagtaaaagttataccaatctagtagcagcatcgctgtcttttcatgtctgtatggcatcacc |
30572497 |
T |
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| Q |
123 |
actgcgactgaagatatccgtatcatgcagtttcatctctctaaagacagatctgcaataaaataatgcaaatttcatc |
201 |
Q |
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| T |
30572496 |
actgcgactggagatattcgtatcatgaagtttcatctctctaaagacagatctgcaatgaaataatgcaaatttcatc |
30572418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 30541748 - 30541690
Alignment:
| Q |
147 |
atgcagtttcatctctctaaagacagatctgcaataaaataatgcaaatttcatcttta |
205 |
Q |
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| T |
30541748 |
atgcagtttcatctctctgaagacagaactgcaatgaaatgatgaaaatttcatcttta |
30541690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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