View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9863_low_56 (Length: 239)
Name: NF9863_low_56
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9863_low_56 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10879339 - 10879560
Alignment:
| Q |
1 |
ctctctgatttgactgaaataaagagatgtaggtatacttagttcaagaaaattgagaagaaagtatggagcctgcatcctccaaatgtgtagaaagagt |
100 |
Q |
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| T |
10879339 |
ctctctgatttgtctgaaataaagagatgtaggtatacttagttcaagaaaattgagaagaaagtatggagcctgcatcctccaaatgtgtagaaaaagc |
10879438 |
T |
|
| Q |
101 |
tgtcgatgttgtgttggacctgactattcggcatgtgggttacatcttctattacaaggaaaatgttagtaaactaaacagtctagttgagaagctaatt |
200 |
Q |
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||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10879439 |
tgttgattttgtgttgtacctgactattcggcatgtgggttacatcttctattacaaggaaaatgttagtgaactaaacagtctagttgagaagctaatt |
10879538 |
T |
|
| Q |
201 |
cttgaaagagagagcctggaac |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
10879539 |
cttgaaagagagagcctggaac |
10879560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10847947 - 10848164
Alignment:
| Q |
1 |
ctctctgatttgactgaaataaagagatgtaggtatacttagttcaagaaaattgagaagaaagtatggagcctgcatcctccaaatgtgtagaaagagt |
100 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| ||||||| |||| ||||||||||| |
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| T |
10847947 |
ctctctgatttgtctgaaataaagagatgtaggtatacttagttcaagaaaatcgagaggaa-gtatggagtatgcatcc---aaatttgtagaaagagc |
10848042 |
T |
|
| Q |
101 |
tgtcgatgttgtgttggacctgactattcggcatgtgggttacatcttctattacaaggaaaatgttagtaaactaaacagtctagttgagaagctaatt |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||| ||||||||||||| | |
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| T |
10848043 |
tgtcgatgttgtgttggacctgactgttcggcatgtgggttacatcttctattacaaggacaatgttagtgaactaaacaatcttgttgagaagctaagt |
10848142 |
T |
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| Q |
201 |
cttgaaagagagagcctggaac |
222 |
Q |
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||||||||| |||| ||||||| |
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| T |
10848143 |
cttgaaagaaagaggctggaac |
10848164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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