View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9863_low_59 (Length: 229)
Name: NF9863_low_59
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9863_low_59 |
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Alignment Details
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 9 - 164
Target Start/End: Complemental strand, 25737338 - 25737183
Alignment:
| Q |
9 |
gtagcataggagattcaaaacacctatgaccttgtctattaagnnnnnnngtgaattagaatgaatcaaatcaaaattacaaagccttctccataccatg |
108 |
Q |
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| T |
25737338 |
gtagcatcagagattcaaaacacccatgaccttgtctattaagaaaaaaagtgaattagaatgaatcaaatcaaaattacaaagccttcttcaaaccatg |
25737239 |
T |
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| Q |
109 |
aacaactcactctaaaacctctagaatgttctcaaatgagaagataaagactccaa |
164 |
Q |
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| T |
25737238 |
aacaactcactctaaaacctctagaatattctcaaatgagaagataaagactccaa |
25737183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 38656643 - 38656558
Alignment:
| Q |
112 |
aactcactctaaaacctctagaatgttctcaaatgagaagataaagactccaaaacttagctaaaaatatcatacaattagaagtcatc |
200 |
Q |
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| T |
38656643 |
aactcactctaaaatctctagaaagttctccaatgacaaga-caagactcgataacatag--aaaaatatcatacgatgagaagtcatc |
38656558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 33469264 - 33469364
Alignment:
| Q |
85 |
ttacaaagccttctccataccatgaacaactcactctaaaacctctagaatgttctcaaatgagaagataaagactccaaaacttagctaaaaatatcat |
184 |
Q |
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||||||| | ||| ||| ||||||| |||||||| |||||||||||| | ||| ||||||| ||| ||||||||||||| || ||||||| ||||| |
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| T |
33469264 |
ttacaaaacattccccaaaccatgagcaactcacactaaaacctctatattgtcttcaaatgcatagaaaaagactccaaaatgtaactaaaaacatcat |
33469363 |
T |
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| Q |
185 |
a |
185 |
Q |
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| T |
33469364 |
a |
33469364 |
T |
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