View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9863_low_6 (Length: 456)
Name: NF9863_low_6
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9863_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 351
Target Start/End: Original strand, 5305709 - 5306046
Alignment:
| Q |
15 |
gacatcaatctaagtcgac-aaagcttactaataagtatacgaatccaaaaattcatatgaactaagaaaagnnnnnnnntaagttctactaagtagtat |
113 |
Q |
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| T |
5305709 |
gacatcaatctaagtcgaccaaagcttactaataagtatacaaatccaaaaattcatatcaactaagaaaagaaagga--taagttatactaagtagtat |
5305806 |
T |
|
| Q |
114 |
aaatcttgaattgtgataattttattacagtgatgatcatgaacgtaagattcagtgtaatcaagggtgtggtaagtgcatttcaataaaaccagtgatg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5305807 |
aaatcttgaattgtgataattttattacagtgatgatcatgaccgtaagattcagtgtaatcaagggtgtggtaagtccatttcaataaaaccagtgatg |
5305906 |
T |
|
| Q |
214 |
atacatctcagttttcaggctgcaaaaggaaaataaaaaacacaacaagtttaacaggggaatgacatgaatctcttgacaaagaactcaatagtatatg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5305907 |
atacatctcagttttcaggctgcaaaaggaaaataaaaaaaacaacaagtttaacaggggaatgacatgaatctcttgacaaagaactcaatagtatatg |
5306006 |
T |
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| Q |
314 |
--nnnnnnnnccacagcaaagaataatgatacattctaaa |
351 |
Q |
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| T |
5306007 |
aaaaaaaaaaccacagcaaagaatactgatacattctaaa |
5306046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 349 - 440
Target Start/End: Original strand, 5306836 - 5306927
Alignment:
| Q |
349 |
aaaatgaagaatttcatatactttaggaccaaattaaacttcaaccaattcattaagcacaaaaccgactaaagaaaagggagaagaaatag |
440 |
Q |
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| T |
5306836 |
aaaatgaagaatttcatatactttaggaccaaattaaacttcaaccaattcattaagcacaaaaccgactaaagaaaagggagaagaaatag |
5306927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 201 - 303
Target Start/End: Original strand, 31655166 - 31655271
Alignment:
| Q |
201 |
aaaaccagtgatgatacatctcagttttcaggctgcaaaaggaaaat--aaaaaaca-caacaagtttaacaggggaatgacatgaatctcttgacaaag |
297 |
Q |
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||||||| |||| ||||||||||||| || || |||||||||||||| |||||||| |||||| ||||||||||||| || ||||||||||||||||| |
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| T |
31655166 |
aaaaccaatgattatacatctcagttctcggggtgcaaaaggaaaatgaaaaaaacagcaacaattttaacaggggaaacacttgaatctcttgacaaag |
31655265 |
T |
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| Q |
298 |
aactca |
303 |
Q |
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|||||| |
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| T |
31655266 |
aactca |
31655271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 421
Target Start/End: Complemental strand, 30481077 - 30481002
Alignment:
| Q |
347 |
ctaaaatgaagaatttcatatactttagg-accaaattaaacttcaaccaattcattaagcacaaaaccgactaaa |
421 |
Q |
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||||||||||| |||| ||| ||||||| |||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
30481077 |
ctaaaatgaaggattttttatgctttagggaccaaattaaacttcaaccatttcaccaagcacaaaaccgactaaa |
30481002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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