View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9863_low_65 (Length: 220)

Name: NF9863_low_65
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9863_low_65
NF9863_low_65
[»] chr5 (1 HSPs)
chr5 (15-196)||(23153962-23154143)
[»] chr4 (8 HSPs)
chr4 (18-203)||(53319791-53319976)
chr4 (15-203)||(23862712-23862901)
chr4 (15-166)||(53669146-53669298)
chr4 (19-137)||(24063577-24063697)
chr4 (70-143)||(55290864-55290938)
chr4 (101-185)||(38722342-38722426)
chr4 (70-183)||(50465496-50465610)
chr4 (70-144)||(523737-523812)
[»] chr3 (3 HSPs)
chr3 (16-203)||(23546463-23546651)
chr3 (15-203)||(40195033-40195222)
chr3 (50-163)||(31515736-31515849)
[»] chr8 (4 HSPs)
chr8 (15-125)||(40464279-40464390)
chr8 (15-203)||(9915422-9915611)
chr8 (155-196)||(40464241-40464282)
chr8 (70-142)||(28154878-28154951)
[»] chr1 (3 HSPs)
chr1 (15-203)||(23624428-23624617)
chr1 (16-185)||(46121953-46122123)
chr1 (70-144)||(51193277-51193352)
[»] chr6 (4 HSPs)
chr6 (26-185)||(23954567-23954727)
chr6 (16-187)||(12100759-12100931)
chr6 (101-193)||(31797542-31797633)
chr6 (109-203)||(4252400-4252493)
[»] chr7 (1 HSPs)
chr7 (19-187)||(31012634-31012804)
[»] scaffold0581 (1 HSPs)
scaffold0581 (78-142)||(9325-9390)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 23154143 - 23153962
Alignment:
Q  15 cagagaaagattaaggaaggattgaagaaggaaagaagtttgtagaaagattgattttccaccgtttggcagcacttcaaaaagttgaggaaagaaagtt 114  Q
    |||||||||||||||||||||||||||||||||||||  |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23154143 cagagaaagattaaggaaggattgaagaaggaaagaaagttgtggaaagattggttttccaccgtttggcagcacttcaaaaagttgaggaaagaaagtt 23154044  T
Q  115 tgaggtgggacccacactcaaaatctttcctcattgatttggacggaaacatgaaagaagcaccaactttttggtaaaatgt 196  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23154043 tgaggtgggacccacactcaaaacctttcctcattgatttggacggaaacatgaaagaagcaccaactttttggtaaaatgt 23153962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 53319976 - 53319791
Alignment:
Q  18 agaaagattaaggaaggattgaagaaggaaagaa-gtttgtagaaagattgattttccaccgtttggcagcacttcaaaaagttgaggaaagaaagtttg 116  Q
    |||||||| |||||| || ||||||||||||||| | |||| ||||||| |||||||||| |||| ||||||||| ||||||||||||||||||||||||    
T  53319976 agaaagataaaggaaagaatgaagaaggaaagaaagattgtggaaagatagattttccactgtttagcagcactttaaaaagttgaggaaagaaagtttg 53319877  T
Q  117 aggtgggacccacactcaaaatctttcctcattgatttggacggaaacatgaaagaagcaccaactttttggtaaaatgttaaaaat 203  Q
    |||||||| |||| ||||||| ||||||||| |  |||||||||||||| ||||| |||||||||||||||  ||||||||||||||    
T  53319876 aggtgggatccacgctcaaaacctttcctcaatattttggacggaaacaggaaag-agcaccaactttttgtgaaaatgttaaaaat 53319791  T

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Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 203
Target Start/End: Complemental strand, 23862901 - 23862712
Alignment:
Q  15 cagagaaagattaaggaaggattgaagaaggaaagaa-gtttgtagaaagattgattttccaccgtttggcagcacttcaaaaagttgaggaaagaaagt 113  Q
    |||||||| || |||||| |||||||||||||||||| |||||| | |||||||| ||||||  |||||| ||||||||||||||| |||||||||||||    
T  23862901 cagagaaatataaaggaaagattgaagaaggaaagaaagtttgtgggaagattgactttccatagtttggaagcacttcaaaaagtagaggaaagaaagt 23862802  T
Q  114 ttgaggtgggacccacactcaaaatctttcctcattgatttggacggaaacatgaaagaagcaccaactttttggtaaaatgttaaaaat 203  Q
    |||||||||||||||   |||||||||||||||  |  ||||||||||||||   ||||| ||   ||||||||| ||||||| ||||||    
T  23862801 ttgaggtgggacccatgttcaaaatctttcctccctattttggacggaaacacagaagaaacattcactttttggaaaaatgtcaaaaat 23862712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 15 - 166
Target Start/End: Original strand, 53669146 - 53669298
Alignment:
Q  15 cagagaaagattaaggaaggattgaagaaggaaagaa-gtttgtagaaagattgattttccaccgtttggcagcacttcaaaaagttgaggaaagaaagt 113  Q
    ||||||||||| |||||| |||||| ||||||||||| || ||| |||||||||  |||||   |||||| ||||||||||||||| |||||||||||||    
T  53669146 cagagaaagataaaggaaagattgaggaaggaaagaaagtctgtggaaagattgtctttccgtagtttggaagcacttcaaaaagtagaggaaagaaagt 53669245  T
Q  114 ttgaggtgggacccacactcaaaatctttcctcattgatttggacggaaacat 166  Q
    ||||||||||| |||| ||||||| ||||||||  | |||||||| |||||||    
T  53669246 ttgaggtgggatccacgctcaaaacctttcctccctaatttggacagaaacat 53669298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 24063577 - 24063697
Alignment:
Q  19 gaaagattaaggaaggattgaagaa-ggaaagaa-gtttgtagaaagattgattttccaccgtttggcagcacttcaaaaagttgaggaaagaaagtttg 116  Q
    |||||||||||||| ||  || ||| |||||||| | |||| ||||||||| |||||||| |||||| |||| ||| |||||  ||||||||||||||||    
T  24063577 gaaagattaaggaaagagagatgaatggaaagaaaggttgtggaaagattgcttttccacagtttggaagcatttctaaaagaagaggaaagaaagtttg 24063676  T
Q  117 aggtgggacccacactcaaaa 137  Q
     |||||||||||||| |||||    
T  24063677 gggtgggacccacacccaaaa 24063697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 143
Target Start/End: Complemental strand, 55290938 - 55290864
Alignment:
Q  70 tttccaccgtttggcagcacttcaaaaagttgaggaaagaaag-tttgaggtgggacccacactcaaaatctttc 143  Q
    ||||||| ||||||||||||||||| |||  |||||||||||| ||||||||||||||||| ||||||| |||||    
T  55290938 tttccactgtttggcagcacttcaagaagaagaggaaagaaagttttgaggtgggacccacgctcaaaacctttc 55290864  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 38722426 - 38722342
Alignment:
Q  101 gaggaaagaaagttt-gaggtgggacccacactcaaaatctttcctcattgatttggacggaaacatgaaagaagcaccaactttt 185  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||| |  ||| || ||||| ||||| ||| |||||||||||    
T  38722426 gaggaaagaaagttttgaggtgggacccacactcaaaacctttcctcactattttagatggaaagatgaaggaa-caccaactttt 38722342  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 183
Target Start/End: Original strand, 50465496 - 50465610
Alignment:
Q  70 tttccaccgtttggcagcacttcaaaaagttgaggaaagaaag-tttgaggtgggacccacactcaaaatctttcctcattgatttggacggaaacatga 168  Q
    |||||| | ||||||||||| | |||||| |||| |||||||| ||||| ||||| ||||| |||||||||||||| ||      ||||||||||||||     
T  50465496 tttccatcctttggcagcacataaaaaagatgagaaaagaaagttttgatgtgggtcccacgctcaaaatctttccacacatccatggacggaaacatgt 50465595  T
Q  169 aagaagcaccaactt 183  Q
    || ||||||||||||    
T  50465596 aaaaagcaccaactt 50465610  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 144
Target Start/End: Complemental strand, 523812 - 523737
Alignment:
Q  70 tttccaccgtttggcagcacttcaaaaagttgaggaaagaaag-tttgaggtgggacccacactcaaaatctttcc 144  Q
    |||||||| |||| |||||| | |||||| ||||||||||||| |||||||||| ||| || ||||||| ||||||    
T  523812 tttccaccctttgacagcacataaaaaagatgaggaaagaaagttttgaggtggaacctacgctcaaaacctttcc 523737  T

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Target: chr3 (Bit Score: 97; Significance: 8e-48; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 23546651 - 23546463
Alignment:
Q  16 agagaaagattaaggaaggattgaagaaggaaagaa-gtttgtagaaagattgattttccaccgtttggcagcacttcaaaaagttgaggaaagaaagtt 114  Q
    ||||||| || |||||| |||||||||||||||||| |||||| |||||||||||||||||  |||||| ||||||| | ||||| ||||||||||||||    
T  23546651 agagaaatataaaggaaagattgaagaaggaaagaaagtttgtggaaagattgattttccatagtttggaagcactttagaaagtagaggaaagaaagtt 23546552  T
Q  115 tgaggtgggacccacactcaaaatctttcctcattgatttggacggaaacatgaaagaagcaccaactttttggtaaaatgttaaaaat 203  Q
    ||| ||||||||||| ||||||||||||||||  ||||||||||||||||||  ||||||||   ||||||||| ||||||| ||||||    
T  23546551 tgatgtgggacccacgctcaaaatctttcctctctgatttggacggaaacattgaagaagcattcactttttggaaaaatgtcaaaaat 23546463  T

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Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 40195033 - 40195222
Alignment:
Q  15 cagagaaagattaaggaaggattgaagaaggaaagaa-gtttgtagaaagattgattttccaccgtttggcagcacttcaaaaagttgaggaaagaaagt 113  Q
    |||||||| || ||||||  ||||||||||||||||| ||||||  ||||||||| |||| |  |||||| ||||||||||||||| |||||||||||||    
T  40195033 cagagaaatataaaggaaatattgaagaaggaaagaaagtttgtgaaaagattgactttctatagtttggaagcacttcaaaaagtagaggaaagaaagt 40195132  T
Q  114 ttgaggtgggacccacactcaaaatctttcctcattgatttggacggaaacatgaaagaagcaccaactttttggtaaaatgttaaaaat 203  Q
    |||||||||||||||||||||||||||||||||  |  |||||||||||||||  ||||||||   ||||||||| ||||||| ||||||    
T  40195133 ttgaggtgggacccacactcaaaatctttcctccctattttggacggaaacatagaagaagcattcactttttggaaaaatgtcaaaaat 40195222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 31515849 - 31515736
Alignment:
Q  50 aagtttgtagaaagattgattttccaccgtttggcagcacttcaaaaagttgaggaaagaaagtttgaggtgggacccacactcaaaatctttcctcatt 149  Q
    |||||||| ||||||||| |||||||| ||||| |||| ||| |||| |  ||||||||||||||||||||||||||||| ||||||| ||||||||  |    
T  31515849 aagtttgtggaaagattgtttttccacagtttgacagcccttaaaaacgaagaggaaagaaagtttgaggtgggacccacgctcaaaacctttcctccct 31515750  T
Q  150 gatttggacggaaa 163  Q
      ||||||||||||    
T  31515749 attttggacggaaa 31515736  T

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Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 40464390 - 40464279
Alignment:
Q  15 cagagaaagattaaggaaggattgaagaaggaaagaa-gtttgtagaaagattgattttccaccgtttggcagcacttcaaaaagttgaggaaagaaagt 113  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||| |||||| |||||||||||||||||||||||||||||    
T  40464390 cagagaaagattaaggaaggattgaagaaggaaagaaagtttgtggaaagattggttttccactgtttggtagcacttcaaaaagttgaggaaagaaagt 40464291  T
Q  114 ttgaggtgggac 125  Q
    ||||||||||||    
T  40464290 ttgaggtgggac 40464279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 15 - 203
Target Start/End: Complemental strand, 9915611 - 9915422
Alignment:
Q  15 cagagaaagattaaggaaggattgaagaaggaaagaa-gtttgtagaaagattgattttccaccgtttggcagcacttcaaaaagttgaggaaagaaagt 113  Q
    |||||||| || |||||| ||||||||||||||| || |||||| |||||||||  ||||||  |||||| ||||||||||||||| |||||||||||||    
T  9915611 cagagaaatataaaggaaagattgaagaaggaaaaaaagtttgtggaaagattggctttccatagtttggaagcacttcaaaaagtagaggaaagaaagt 9915512  T
Q  114 ttgaggtgggacccacactcaaaatctttcctcattgatttggacggaaacatgaaagaagcaccaactttttggtaaaatgttaaaaat 203  Q
    |||||||||||||| | |||||||||||| |||  |  |||||||||||||||  ||||||||   ||||||||| ||||||| ||||||    
T  9915511 ttgaggtgggacccgcgctcaaaatcttttctccctattttggacggaaacattgaagaagcattcactttttgggaaaatgtcaaaaat 9915422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 40464282 - 40464241
Alignment:
Q  155 ggacggaaacatgaaagaagcaccaactttttggtaaaatgt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  40464282 ggacggaaacatgaaagaagcaccaactttttggtaaaatgt 40464241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 28154878 - 28154951
Alignment:
Q  70 tttccaccgtttggcagcacttcaaaaagttgaggaaagaaag-tttgaggtgggacccacactcaaaatcttt 142  Q
    |||||||| ||||||||||||| ||||||  || ||||||||| |||||||||||||||||| |||||| ||||    
T  28154878 tttccaccctttggcagcactttaaaaagaagaagaaagaaagttttgaggtgggacccacattcaaaaacttt 28154951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 15 - 203
Target Start/End: Complemental strand, 23624617 - 23624428
Alignment:
Q  15 cagagaaagattaaggaaggattgaagaaggaaagaa-gtttgtagaaagattgattttccaccgtttggcagcacttcaaaaagttgaggaaagaaagt 113  Q
    |||||||| || |||||| |||||||||||||||||| |||||| ||||| |||  ||||||  |||||| ||||||||||||||| |||||||||||||    
T  23624617 cagagaaatataaaggaaagattgaagaaggaaagaaagtttgtggaaaggttggctttccatagtttggaagcacttcaaaaagtagaggaaagaaagt 23624518  T
Q  114 ttgaggtgggacccacactcaaaatctttcctcattgatttggacggaaacatgaaagaagcaccaactttttggtaaaatgttaaaaat 203  Q
    |||||||||||||||  ||||||||||||||||  |  ||||||| |||||||  ||||||||   ||||||||| ||||||| ||||||    
T  23624517 ttgaggtgggacccatgctcaaaatctttcctccctattttggacagaaacattgaagaagcattcactttttggaaaaatgtcaaaaat 23624428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 46122123 - 46121953
Alignment:
Q  16 agagaaagattaaggaaggattgaagaaggaaagaa-gtttgtagaaagattgattttccaccgtttggcagcacttcaaaaagttgaggaaagaaagt- 113  Q
    ||||||||||||||||| ||| |||||||| ||||| || ||| ||||||||||||||||||| ||||||| ||||||||||||  |||||||||||||     
T  46122123 agagaaagattaaggaaagatagaagaaggtaagaaagtgtgtggaaagattgattttccaccctttggcaacacttcaaaaagaagaggaaagaaagtc 46122024  T
Q  114 ttgaggtgggacccacactcaaaatctttcctcattgatttggacggaaacatgaaagaagcaccaactttt 185  Q
    |||||||||||||||||||||||| |||||||||    ||||||| |||| ||| ||| |||||||||||||    
T  46122023 ttgaggtgggacccacactcaaaacctttcctcaccattttggacagaaagatg-aaggagcaccaactttt 46121953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 144
Target Start/End: Complemental strand, 51193352 - 51193277
Alignment:
Q  70 tttccaccgtttggcagcacttcaaaaagttgaggaaagaaagttt-gaggtgggacccacactcaaaatctttcc 144  Q
    |||||||| ||||||| ||| | |||||| || ||||||||||||| |||||||||||||| ||||||| ||||||    
T  51193352 tttccaccctttggcaacacataaaaaagatgtggaaagaaagttttgaggtgggacccacgctcaaaacctttcc 51193277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 26 - 185
Target Start/End: Complemental strand, 23954727 - 23954567
Alignment:
Q  26 taaggaaggattgaagaaggaaagaa-gtttgtagaaagattgattttccaccgtttggcagcacttcaaaaagttgaggaaagaaag-tttgaggtggg 123  Q
    ||||||| ||| |||||||| ||||| || ||| ||||||||||||||||||| ||||||| |||||||||||| || |||||||||| |||||||||||    
T  23954727 taaggaaagatagaagaaggtaagaaagtgtgtggaaagattgattttccaccctttggcaacacttcaaaaagatgtggaaagaaagttttgaggtggg 23954628  T
Q  124 acccacactcaaaatctttcctcattgatttggacggaaacatgaaagaagcaccaactttt 185  Q
    |||||||| ||||| ||||||||| |  ||||||||||||  || |||||||| ||||||||    
T  23954627 acccacacccaaaacctttcctcactattttggacggaaagttg-aagaagcatcaactttt 23954567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 12100759 - 12100931
Alignment:
Q  16 agagaaagattaaggaaggattgaagaaggaaagaa-gtttgtagaaagattgattttccaccgtttggcagcacttcaaaaagttgaggaaagaaagtt 114  Q
    ||||||||||||| ||| ||| |||||||| ||||| || ||| ||||||||  ||||||||| ||||||| ||  ||||||||  ||||||| ||||||    
T  12100759 agagaaagattaaagaaagatagaagaaggtaagaaagtgtgtggaaagattagttttccaccctttggcaacaactcaaaaagaagaggaaaaaaagtt 12100858  T
Q  115 t-gaggtgggacccacactcaaaatctttcctcattgatttggacggaaacatgaaagaagcaccaactttttg 187  Q
    | |||||||||||||||||||||| ||||||||| |  ||||||| |||| ||| ||||| |||||||||||||    
T  12100859 ttgaggtgggacccacactcaaaacctttcctcactattttggacagaaagatg-aagaaacaccaactttttg 12100931  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 101 - 193
Target Start/End: Complemental strand, 31797633 - 31797542
Alignment:
Q  101 gaggaaagaaagtttgaggtgggacccacactcaaaatctttcctcattgatttggacggaaacatgaaagaagcaccaactttttggtaaaa 193  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||  || ||||||||||||||| |||||| || |||||||||| |||||    
T  31797633 gaggaaagaaagtttgaggtgggacccacgctcaaaacctttcctcgctgctttggacggaaacat-aaagaaacatcaactttttgataaaa 31797542  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 203
Target Start/End: Complemental strand, 4252493 - 4252400
Alignment:
Q  109 aaagtttgaggtgggacccacactcaaaatctttcctcattgatttggacggaaacatgaaagaagcaccaactttttggtaaaatgttaaaaat 203  Q
    ||||||||||||||||| ||   |||||| ||||||||| || |||||||| ||||| | ||| ||||| |||||||||  ||||||| ||||||    
T  4252493 aaagtttgaggtgggactcatgttcaaaacctttcctcaatgttttggacgaaaaca-ggaaggagcactaactttttgcaaaaatgtcaaaaat 4252400  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 31012804 - 31012634
Alignment:
Q  19 gaaagattaaggaaggattgaagaa-ggaaagaa-gtttgtagaaagattgattttccaccgtttggcagcacttcaaaaagttgaggaaagaaagtttg 116  Q
    |||||||||||||| ||  || ||| |||||||| | |||| ||||||||| ||||||||  ||||| |||| ||| |||||  ||||||||||||||||    
T  31012804 gaaagattaaggaaagagagatgaatggaaagaaaggttgtggaaagattgcttttccacattttggaagcatttctaaaagaagaggaaagaaagtttg 31012705  T
Q  117 aggtgggacccacactcaaaatctttcctcattgatttggacggaaacatgaaagaagcaccaactttttg 187  Q
     |||||||||||||| ||||| |||||||   || ||||||||||||    |||||||||||||| |||||    
T  31012704 gggtgggacccacacccaaaacctttccttgctgctttggacggaaaacacaaagaagcaccaacattttg 31012634  T

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Target: scaffold0581 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0581
Description:

Target: scaffold0581; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 9390 - 9325
Alignment:
Q  78 gtttggcagcacttcaaaaagttgaggaaagaaag-tttgaggtgggacccacactcaaaatcttt 142  Q
    ||||||||||||||||||||   |||||||||||| |||||| || ||||||| ||||||| ||||    
T  9390 gtttggcagcacttcaaaaataagaggaaagaaagttttgagatgtgacccacgctcaaaaccttt 9325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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