View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9863_low_7 (Length: 430)
Name: NF9863_low_7
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9863_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 423
Target Start/End: Original strand, 34387152 - 34387558
Alignment:
| Q |
18 |
aatatgggttcttgatttgtatgagctcttg-acatctggcagtatgaaaacaaacactgcgtttcaataacataaacacaacgaaggcctagggaagga |
116 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |
|
|
| T |
34387152 |
aatatgggttcttgatttgtattagctcttgtacatctggcagtatgaaaacaaacactgcgtttcaataacctaaacacaaagaaggccaagggaagga |
34387251 |
T |
|
| Q |
117 |
gggtccacattaaacaaagtgatggatccttatctggaaccagccaatgaacgtccacatttcatacccaatcaatatccacctcatgttctagtccgct |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34387252 |
gggtccacattaaacaaagtgatggatccttatctggaaccagccaatgaacgtccacatttcatacccaatcaatatccacctcatgttctagtccgcg |
34387351 |
T |
|
| Q |
217 |
ctatgaactgagtattttactctttttctatctggtgactcaagtcacaagataaccaccaaaactcagattttatttatttttaaccaataaacatata |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34387352 |
ctatgaactgagtattttactctttttctatctggtgactcaagtcacaagataaccaccaaaactcagattttatttatttttaaccaataaacatata |
34387451 |
T |
|
| Q |
317 |
gccttcttgtttcttagacttctcaaaagcacaaagctgaaaccagtcaaatcatggttcatttgctcacaccgactcctaccacagccgcaacagctct |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34387452 |
gccttcttgtttcttagacttctcaaaagcacaaagctgaaaccagtcaaatcatggttcatttgctcacaccgactcctaccacagccgcaacagctct |
34387551 |
T |
|
| Q |
417 |
ctctgtg |
423 |
Q |
| |
|
||||||| |
|
|
| T |
34387552 |
ctctgtg |
34387558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University