View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9863_low_70 (Length: 202)
Name: NF9863_low_70
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9863_low_70 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 38892904 - 38893090
Alignment:
| Q |
1 |
tcttgggtccactttttgcagggaaggcaagaagagagaaacagaaggcaactagtgactttagattgaaaagtaatggcaaaggagcaaattcaggtgc |
100 |
Q |
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| T |
38892904 |
tcttggttccactttttgcagggaaggcaagaagagagaaacagaaggaaactagtgactttagattgaaaagtaatggcaaaggagcaaattcaggtgc |
38893003 |
T |
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| Q |
101 |
taaatgcacttgatgtggcgaaaacgcaatggtatcacttcacagcaatcatcatagctggaatgggattctttacggatgcctatg |
187 |
Q |
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| T |
38893004 |
taaatgcacttgatgtggcgaaaacgcaatggtatcacttcacagcaatcatcattgctggaatgggattctttactgatgcctatg |
38893090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 66 - 187
Target Start/End: Original strand, 38883777 - 38883898
Alignment:
| Q |
66 |
ttgaaaagtaatggcaaaggagcaaattcaggtgctaaatgcacttgatgtggcgaaaacgcaatggtatcacttcacagcaatcatcatagctggaatg |
165 |
Q |
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| T |
38883777 |
ttgaatagtcatggctaaggatcaaattcaggtgctaaatgcgcttgatgtggctaaaacacaatggtaccatttcactgcaatcatcatagctggtatg |
38883876 |
T |
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| Q |
166 |
ggattctttacggatgcctatg |
187 |
Q |
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| T |
38883877 |
ggattctttacagatgcctatg |
38883898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 94 - 182
Target Start/End: Complemental strand, 30621081 - 30620993
Alignment:
| Q |
94 |
caggtgctaaatgcacttgatgtggcgaaaacgcaatggtatcacttcacagcaatcatcatagctggaatgggattctttacggatgc |
182 |
Q |
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| T |
30621081 |
caggtgctaaatgcactagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgc |
30620993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 187
Target Start/End: Original strand, 16223190 - 16223280
Alignment:
| Q |
97 |
gtgctaaatgcacttgatgtggcgaaaacgcaatggtatcacttcacagcaatcatcatagctggaatgggattctttacggatgcctatg |
187 |
Q |
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| T |
16223190 |
gtgctaaatgcacttgatgtggccaagacacaattgtatcacttcactacaattgtgattgctggaatgggattcttcactgatgcatatg |
16223280 |
T |
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