View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9863_low_8 (Length: 427)
Name: NF9863_low_8
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9863_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 20 - 417
Target Start/End: Complemental strand, 37852586 - 37852197
Alignment:
| Q |
20 |
attacatggccactttgtttacaggcaagtttctatagaagaaggagatgccaagtcaaaagagtttggaatcatgtttatcgaaaccagtgcaaaagca |
119 |
Q |
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| T |
37852586 |
attacatggccgctttgtttacaggcaagtttctatagaagaaggagatgccaagtcaaaagagtttggaatcatgtttatcgaaaccagtgcaaaagca |
37852487 |
T |
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| Q |
120 |
ggcttcaatatcaaggtcagaattaatggattttggatttgcatagttgctttggtattttgttttactagagcatgctcctcaactatgatgcatgtga |
219 |
Q |
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| T |
37852486 |
ggcttcaatatcaaggtcagaattaatggattttggatttgcatagttgctttggtattttgttttactagagcatgctcctcaactatgatgcatgtga |
37852387 |
T |
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| Q |
220 |
tctataacatcaatatgcaaaattctgatatgattacctttaactaactttcacatcgaacataatatacctattttgttattttgttttacatcgaata |
319 |
Q |
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| T |
37852386 |
tctataaaatcaatatgcaaaattctgatatgattacctttaactaactttcacatcgaacataatatacctattt--------tgttttacatcgaata |
37852295 |
T |
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| Q |
320 |
tcaatatgcatggatcttaatttttcaagtttatcttctttcctatgttggttcttgtgtcctcattgttatctgtcaatgcaaaatcgcagcctttg |
417 |
Q |
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| T |
37852294 |
tcaatatgcatggatcttaatttttcaagtttatcttctttcctatgttggttcttgtgtcctcattgttatctgtcgatgcaaaatcgcagcctttg |
37852197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 42 - 136
Target Start/End: Complemental strand, 39526378 - 39526284
Alignment:
| Q |
42 |
aggcaagtttctatagaagaaggagatgccaagtcaaaagagtttggaatcatgtttatcgaaaccagtgcaaaagcaggcttcaatatcaaggt |
136 |
Q |
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| T |
39526378 |
aggcaagtctctatagaggaaggagatgccaagtcgcgtgagagcgggatcatgtttatagaaactagtgcaaaagcaggatttaatatcaaggt |
39526284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 380 - 417
Target Start/End: Complemental strand, 32557073 - 32557036
Alignment:
| Q |
380 |
cctcattgttatctgtcaatgcaaaatcgcagcctttg |
417 |
Q |
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| T |
32557073 |
cctcattgttatctgtcaatgcaaaatcgctgcctttg |
32557036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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