View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9864_high_1 (Length: 521)
Name: NF9864_high_1
Description: NF9864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9864_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Complemental strand, 11179924 - 11179438
Alignment:
| Q |
1 |
acgcttaagagatgatcctcttcattcatttatagtgccattcaactccattcaattctgtgctcaccacaattagctacttgttcaagccagagccatg |
100 |
Q |
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| T |
11179924 |
acgcttaagagatgatcctcttcattcatttatagtgccattcaa----------ttctgtgctcaccacaattagctacttgttcaagccagagccatg |
11179835 |
T |
|
| Q |
101 |
tcgaaatatctaataacttgcaaaatatttgggcgccttatttcgatatcaaaattaaaagctctatgctgtttgttcgatcccttcttttcagacgttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11179834 |
tcgaaatatctaataacttgcaaaatatttgggcgccttatttcgatatcaaaattaaaagctctatgctgtttgttcgatcccttcttttcagacgttg |
11179735 |
T |
|
| Q |
201 |
gttacattacaaggaacctttatatattcaattatggcgtcgtcaacattcttgacatttctacacttctcaagaataagcttgcaaaaataatctgacc |
300 |
Q |
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| T |
11179734 |
gttacattaaaaggaacctttatatattcaattatggcgtcgtcaacattcttgacatttctacacttctcaagaataagcttgcaaaaataatctgacc |
11179635 |
T |
|
| Q |
301 |
aagcctatttaatttgaagatttgctatgagtatgggtgttctatatgttttgctatttcttttttaaacaagtttctcgctccattcttgacaatataa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11179634 |
aagcctatttaatttgaagatttgctatgagtatgggtgttctatatgttttgctatttcttttttaaacaagtttctcgctccattcttgacaatataa |
11179535 |
T |
|
| Q |
401 |
aagaatttcatgcagacattcaatcatatttaacatataaatacttgtataagtattttagaaaataacattatgacataacacattaaaaaacttt |
497 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11179534 |
aagaatttcatgcagacattcaatcatatttaacatataaatacttgaataagtattttagaaaataacattatgacataacacattaaaaaacttt |
11179438 |
T |
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