View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9864_high_3 (Length: 310)
Name: NF9864_high_3
Description: NF9864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9864_high_3 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 9 - 307
Target Start/End: Original strand, 7129206 - 7129504
Alignment:
| Q |
9 |
tcaaaactcgttgctcaggagtacgatttgtgaaattaaatcttctctgaccaacattaaggtccttaattctcttactaagttccttaattttctgaac |
108 |
Q |
| |
|
||||||||||||||||||| | |||||||| |||||||| ||||| | ||| ||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
7129206 |
tcaaaactcgttgctcaggtgcgcgatttgtaaaattaaagactctcttatcaaaattaagggcctcaattctcttactaagttccttaattttctgaac |
7129305 |
T |
|
| Q |
109 |
cattttgtaagaaaagagaagctggttggatgatgagaagaagatgcgaacctttttagccttcttgtgattggtcatcacttgtcgcctcaagtcttcg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7129306 |
cattttgtaagaaaagagaagctggttggatgatgagaagaagatgcgaacctttttagccttcttgtgattggtcatcacttgtcgcctcaagtcttcg |
7129405 |
T |
|
| Q |
209 |
gtgttaaagtcatcaagcaagtcatcggcatcatcaagagcatccttgagcttttccaaccagagttgaacttgatggttgttggctctctgcttctcc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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|
| T |
7129406 |
gtgttaaagtcatcaagcaagtcatcggcatcatcaagagcatccttgagcttttccaaccagagttgaacttgatggttgttggctccctgctgctcc |
7129504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 4 - 307
Target Start/End: Complemental strand, 7481937 - 7481634
Alignment:
| Q |
4 |
ttgtttcaaaactcgttgctcaggagtacgatttgtgaaattaaatcttctctgaccaacattaaggtccttaattctcttactaagttccttaattttc |
103 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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|
| T |
7481937 |
ttgtttcaaaactcgttgctcaggtgtacgatttgtaaaattaaaaattctctgaccaacattaagagcctcaattctcttactaagttccttaattttc |
7481838 |
T |
|
| Q |
104 |
tgaaccattttgtaagaaaagagaagctggttggatgatgagaagaagatgcgaacctttttagccttcttgtgattggtcatcacttgtcgcctcaagt |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| | ||||||| |||||||||||||||| |
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|
| T |
7481837 |
tgaaccattttgtaagaaaagagaagctggttggatgatgagaagaagatgtaaaactttttagccttcttgttactggtcatgacttgtcgcctcaagt |
7481738 |
T |
|
| Q |
204 |
cttcggtgttaaagtcatcaagcaagtcatcggcatcatcaagagcatccttgagcttttccaaccagagttgaacttgatggttgttggctctctgctt |
303 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| || ||||| |
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|
| T |
7481737 |
cttcagtgttaaagtcatcgagcaagtcatcggcatcatcaagagcatctttgagcttttccagccagagttgaacttgatggttgttggttccctgctg |
7481638 |
T |
|
| Q |
304 |
ctcc |
307 |
Q |
| |
|
|||| |
|
|
| T |
7481637 |
ctcc |
7481634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 4 - 293
Target Start/End: Complemental strand, 7520006 - 7519717
Alignment:
| Q |
4 |
ttgtttcaaaactcgttgctcaggagtacgatttgtgaaattaaatcttctctgaccaacattaaggtccttaattctcttactaagttccttaattttc |
103 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| || ||||| ||||| | ||||||||||||| ||| ||||||||||||||||||||||||| || |
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|
| T |
7520006 |
ttgtttcaaaactcgttgctcaggagtgcgatttgtaaagttaaaacttcttttaccaacattaagggcctcaattctcttactaagttccttaattatc |
7519907 |
T |
|
| Q |
104 |
tgaaccattttgtaagaaaagagaagctggttggatgatgagaagaagatgcgaacctttttagccttcttgtgattggtcatcacttgtcgcctcaagt |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| | ||||||||||||||||||||||| |
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|
| T |
7519906 |
tgaaccattttgtaagaaaagagaagctggttggatgatgagaagaagatgtgaaactttttagccttcttgttacaggtcatcacttgtcgcctcaagt |
7519807 |
T |
|
| Q |
204 |
cttcggtgttaaagtcatcaagcaagtcatcggcatcatcaagagcatccttgagcttttccaaccagagttgaacttgatggttgttgg |
293 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||| |
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|
| T |
7519806 |
cttcggtgttgaagtcatcaagcaagttatcggcatcatcaagagcatctttcagcttttccaaccacagttgaacttgatggttgttgg |
7519717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 7722472 - 7722778
Alignment:
| Q |
1 |
tctttgtttcaaaactcgttgctcaggagtacgatttgtgaaattaaatcttctctgaccaacattaaggtccttaattctcttactaagttccttaatt |
100 |
Q |
| |
|
||||||| ||||||||||||||||||| || |||||||| |||||||| ||||||| | ||| ||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
7722472 |
tctttgtctcaaaactcgttgctcaggtgtgcgatttgtaaaattaaaacttctcttatcaatattaagggcctcaattctcttactaagttccttaatt |
7722571 |
T |
|
| Q |
101 |
ttctgaaccattttgtaagaaaagagaagctggttggatgatgagaagaagatgcgaacctttttagccttcttgtgattggtcatcacttgtcgcctca |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||| | ||||||||||||||||||||| |
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|
| T |
7722572 |
ttctgaaccattttgtatgaaaagagaagttggttggatgatgagaagaagatgcaaaactttttagccttcttgttactggtcatcacttgtcgcctca |
7722671 |
T |
|
| Q |
201 |
agtcttcggtgttaaagtcatcaagcaagtcatcggcatcatcaagagcatccttgagcttttccaaccagagttgaacttgatggttgttggctctctg |
300 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||| | |||||||||||||||||||||||||| || ||| |
|
|
| T |
7722672 |
agtcttcagtgttaaagtcatcaagcacgtcatcggcatcatcaagagcatctttgagattttcaagccagagttgaacttgatggttgttggttccctg |
7722771 |
T |
|
| Q |
301 |
cttctcc |
307 |
Q |
| |
|
|| |||| |
|
|
| T |
7722772 |
ctgctcc |
7722778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 293
Target Start/End: Complemental strand, 7494334 - 7494050
Alignment:
| Q |
9 |
tcaaaactcgttgctcaggagtacgatttgtgaaattaaatcttctctgaccaacattaaggtccttaattctcttactaagttccttaattttctgaac |
108 |
Q |
| |
|
||||||||||||||||||| | ||||||||| |||||||| ||||| | ||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7494334 |
tcaaaactcgttgctcaggtgcacgatttgtaaaattaaagactctcttagcaacattaagggcctcaattctcttactaagttccttaattttctgaac |
7494235 |
T |
|
| Q |
109 |
cattttgtaagaaaagagaagctggttggatgatgagaagaagatgcgaacctttttagccttcttgtgattggtcatcacttgtcgcctcaagtcttcg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| | |||||||||| ||||||||||||||||| |
|
|
| T |
7494234 |
cattttgtaagaaaagagaagctggttggatgatgagaagaagatgtgaaactttttagccttcttgttactggtcatcacctgtcgcctcaagtcttcc |
7494135 |
T |
|
| Q |
209 |
gtgttaaagtcatcaagcaagtcatcggcatcatcaagagcatccttgagcttttccaaccagagttgaacttgatggttgttgg |
293 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7494134 |
gtgttaaagtcatcgagcaagtcatcggcatcatcaagagcatctttcagcttttccaaccacagttgaacttgatggttgttgg |
7494050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 7714185 - 7714486
Alignment:
| Q |
1 |
tctttgtttcaaaactcgttgctcaggagtacgatttgtgaaattaaatcttctctgaccaacattaaggtccttaattctcttactaagttccttaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||| ||||||| | | |||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
7714185 |
tctttgtttcaaaactcgttgctcaggagtgcgatttgtaaaattaaaacttctcttattagcattaaggtcctcaattctcttacttagttccttaatt |
7714284 |
T |
|
| Q |
101 |
ttctgaaccattttgtaagaaaagagaagctggttggatgatgagaagaagatgcgaacctttttagccttcttgtgattggtcatcacttgtcgcctca |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
7714285 |
ttctgaaccattttgaaagaaaagagaagttggttggatgatgagaagaagatgcaaacctttttagctttcttgtgattggtcatcacttgtcacctca |
7714384 |
T |
|
| Q |
201 |
agtcttcggtgttaaagtcatcaagcaagtcatcggcatcatcaagagcatccttgagcttttccaaccagagttgaacttgatggttgttggctctctg |
300 |
Q |
| |
|
|||||| ||||| |||| || || |||||||||||||||| ||||||||| ||||| ||||||| ||| |||||||||| |||||||||||||| ||| |
|
|
| T |
7714385 |
ggtcttccgtgttgaagtaattgagaaagtcatcggcatcataaagagcatctttgagattttccagccatagttgaacttcatggttgttggctccctg |
7714484 |
T |
|
| Q |
301 |
ct |
302 |
Q |
| |
|
|| |
|
|
| T |
7714485 |
ct |
7714486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 7506606 - 7506355
Alignment:
| Q |
1 |
tctttgtttcaaaactcgttgctcaggagtacgatttgtgaaattaaatcttctctgaccaacattaaggtccttaattctcttactaagttccttaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||| |||||| ||||||||||||| ||| |||||||||||||||||| |||||| |
|
|
| T |
7506606 |
tctttgtttcaaaactcgttgctcaggagtgcgatttgtaaaattaaaaattctcttaccaacattaagggcctcaattctcttactaagttcattaatt |
7506507 |
T |
|
| Q |
101 |
ttctgaaccattttgtaagaaaagagaagctggttggatgatgagaagaagatgcgaacctttttagccttcttgtgattggtcatcacttgtcgcctca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
7506506 |
ttctgaaccattttgtaagaaaagagaagttggttggatgatgagaagaagatgtgaaactttttagccttcttgttactggtcatcacttgtcgcctca |
7506407 |
T |
|
| Q |
201 |
agtcttcggtgttaaagtcatcaagcaagtcatcggcatcatcaagagcatc |
252 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
7506406 |
agtcttcggtgttgaagtcatcgagcaagtcatcagcatcatcaagagcatc |
7506355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 293
Target Start/End: Complemental strand, 7528051 - 7527767
Alignment:
| Q |
9 |
tcaaaactcgttgctcaggagtacgatttgtgaaattaaatcttctctgaccaacattaaggtccttaattctcttactaagttccttaattttctgaac |
108 |
Q |
| |
|
||||||||||||||||||| | |||||||| |||||||| ||||| | ||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7528051 |
tcaaaactcgttgctcaggtgcgcgatttgtaaaattaaagactctcttatcaacattaagggcctcaattctcttactaagttccttaattttctgaac |
7527952 |
T |
|
| Q |
109 |
cattttgtaagaaaagagaagctggttggatgatgagaagaagatgcgaacctttttagccttcttgtgattggtcatcacttgtcgcctcaagtcttcg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7527951 |
cattttgtaagaaaagagaagctggttggatgatgagaagaagatgcggacctttttagctttcttgtgattggtcatcacttgtcgcctcagttcttcc |
7527852 |
T |
|
| Q |
209 |
gtgttaaagtcatcaagcaagtcatcggcatcatcaagagcatccttgagcttttccaaccagagttgaacttgatggttgttgg |
293 |
Q |
| |
|
||||| |||| ||| || ||||||||||||||||||| |||||| ||||| ||||||| ||| |||||||||||||||||||||| |
|
|
| T |
7527851 |
gtgttgaagtaatcgagaaagtcatcggcatcatcaaaagcatctttgagattttccagccatagttgaacttgatggttgttgg |
7527767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 76 - 275
Target Start/End: Original strand, 16750570 - 16750769
Alignment:
| Q |
76 |
aattctcttactaagttccttaattttctgaaccattttgtaagaaaagagaagctggttggatgatgagaagaagatgcgaacctttttagccttcttg |
175 |
Q |
| |
|
||||| ||| ||||||| ||||||||||||| |||| || | |||||||||||||||||||| || || |||||||||||||||||||||||||||||| |
|
|
| T |
16750570 |
aattcgcttcctaagtttcttaattttctgagccatgttaaacgaaaagagaagctggttggaagaggataagaagatgcgaacctttttagccttcttg |
16750669 |
T |
|
| Q |
176 |
tgattggtcatcacttgtcgcctcaagtcttcggtgttaaagtcatcaagcaagtcatcggcatcatcaagagcatccttgagcttttccaaccagagtt |
275 |
Q |
| |
|
| || |||| ||||| ||| ||||||||| || || ||||||||||||||||| ||||||||||||| ||| |||||||| |||| ||| |||| |
|
|
| T |
16750670 |
tcttttgtcagtacttgacgctacaagtcttcagtaaaaacatcatcaagcaagtcatcagcatcatcaagagtatctttgagcttctccacccatagtt |
16750769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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