View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9864_high_4 (Length: 260)

Name: NF9864_high_4
Description: NF9864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9864_high_4
NF9864_high_4
[»] chr1 (11 HSPs)
chr1 (35-212)||(23786894-23787071)
chr1 (97-212)||(24621796-24621911)
chr1 (52-134)||(47569024-47569106)
chr1 (167-215)||(4251615-4251663)
chr1 (211-247)||(24621729-24621765)
chr1 (156-212)||(28239044-28239100)
chr1 (211-247)||(23787102-23787138)
chr1 (156-212)||(28231471-28231527)
chr1 (156-212)||(47569137-47569190)
chr1 (167-212)||(671046-671091)
chr1 (159-212)||(6326807-6326860)


Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 35 - 212
Target Start/End: Original strand, 23786894 - 23787071
Alignment:
Q  35 ttatgatattcttgtcgatggattgtgtgagataggagaaactcaattagccatcaacatgttgagacaggcactgctgattgaaagggaaccagaagat 134  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23786894 ttataatattcttgtcgatggattatgtgagataggagaaactcaattagccatcaacatgttgagacaggcactgctgattgaaagggaaccagaagat 23786993  T
Q  135 acttgtgtttatctcacgtcttgttataactcaatcatattcaggctctccaaagaaagacttgtaaaccaagcctat 212  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23786994 acttgtgtttctctcacgtcttgttataactcaatcatattcaggctctccaaagaaagacttgtaaaccaagcctat 23787071  T

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Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 97 - 212
Target Start/End: Complemental strand, 24621911 - 24621796
Alignment:
Q  97 tgagacaggcactgctgattgaaagggaaccagaagatacttgtgtttatctcacgtcttgttataactcaatcatattcaggctctccaaagaaagact 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24621911 tgagacaggcactgctgattgaaagggaaccagaagatacttgtgtttatctcacgtcttgttataactcaatcatattcaggctctccaaagaaagact 24621812  T
Q  197 tgtaaaccaagcctat 212  Q
    ||||||||||||||||    
T  24621811 tgtaaaccaagcctat 24621796  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 134
Target Start/End: Original strand, 47569024 - 47569106
Alignment:
Q  52 atggattgtgtgagataggagaaactcaattagccatcaacatgttgagacaggcactgctgattgaaagggaaccagaagat 134  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| | ||||||| |||||    
T  47569024 atggattatgtgagataggagaaactcaattagccatcaatatgttgagacaggcactactgattgacaaggaaccaaaagat 47569106  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 4251663 - 4251615
Alignment:
Q  167 aatcatattcaggctctccaaagaaagacttgtaaaccaagcctatctt 215  Q
    |||||||| |||||||| |||||| ||||||||||||||||||||||||    
T  4251663 aatcatatccaggctctgcaaagatagacttgtaaaccaagcctatctt 4251615  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 24621765 - 24621729
Alignment:
Q  211 atcttgcttaaccctagaacatatgcaaatctaatct 247  Q
    |||||||||||||||||||||||||||||||||||||    
T  24621765 atcttgcttaaccctagaacatatgcaaatctaatct 24621729  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 28239044 - 28239100
Alignment:
Q  156 tgttataactcaatcatattcaggctctccaaagaaagacttgtaaaccaagcctat 212  Q
    |||||||| | |||||||| |||||||| |||||| |||||||||||||||||||||    
T  28239044 tgttataattaaatcatatacaggctctgcaaagatagacttgtaaaccaagcctat 28239100  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 23787102 - 23787138
Alignment:
Q  211 atcttgcttaaccctagaacatatgcaaatctaatct 247  Q
    |||||||||||||||| ||||||||||||||||||||    
T  23787102 atcttgcttaaccctataacatatgcaaatctaatct 23787138  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 28231471 - 28231527
Alignment:
Q  156 tgttataactcaatcatattcaggctctccaaagaaagacttgtaaaccaagcctat 212  Q
    |||||||| ||||| |||||||| |||| |||||| |||||||| ||||||||||||    
T  28231471 tgttataattcaattatattcagactctgcaaagatagacttgttaaccaagcctat 28231527  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 47569137 - 47569190
Alignment:
Q  156 tgttataactcaatcatattcaggctctccaaagaaagacttgtaaaccaagcctat 212  Q
    |||||||||||   ||||||||| |||| |||||| |||||||||||||||||||||    
T  47569137 tgttataactc---catattcagactctgcaaagatagacttgtaaaccaagcctat 47569190  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 671091 - 671046
Alignment:
Q  167 aatcatattcaggctctccaaagaaagacttgtaaaccaagcctat 212  Q
    ||||||||||||||| | |||||| |||||||||||||||| ||||    
T  671091 aatcatattcaggctgtgcaaagatagacttgtaaaccaaggctat 671046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 6326860 - 6326807
Alignment:
Q  159 tataactcaatcatattcaggctctccaaagaaagacttgtaaaccaagcctat 212  Q
    |||||||| |||||| |||| |||| |||||| ||||||| |||||||||||||    
T  6326860 tataactcgatcatactcagactctgcaaagatagacttgcaaaccaagcctat 6326807  T

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