View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9864_low_1 (Length: 588)
Name: NF9864_low_1
Description: NF9864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9864_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 1 - 580
Target Start/End: Complemental strand, 29838441 - 29837862
Alignment:
| Q |
1 |
gatgaccgtcactggatgatcttggaagcagcagcaaattagcctttgacagtaatagcattgacatcaaatgcaaaaccgacaacacctcataccaagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29838441 |
gatgaccgtcactggatgatcttggaagcagcagcaaattagcctttgacagtaatagcattgacatcaaatgcaaaaccgacaacacctcataccaagc |
29838342 |
T |
|
| Q |
101 |
attagacatggttgtttcctgtaaagagcgcacaaaagtaaccggaacaaattgatcagcattcttctctataggaagtaaattaaactcaaaaatatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29838341 |
attagacatggttgtttcctgtaaagagcgcacaaaagtaaccggaacaaattgatcagcattcttctctataggaagtaaattaaactcaaaaatatgt |
29838242 |
T |
|
| Q |
201 |
atgaattttagaaggtacctctttttcatcttcttggttcatccaaacaaactgtactttgtattgtaaatgacttcctacaccataaagataagtaata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29838241 |
atgaattttagaaggtacctctttttcatcttcttggttcatccaaacaaactgtactttgtattgtaaatgacttcctacaccataaagataagtaata |
29838142 |
T |
|
| Q |
301 |
ataatcagtactttgtcttacagagagcatacatcaaacaccggggtctagcacaagtggttggtgcgcatggtgtgtaaatggtttaaacatcgaggta |
400 |
Q |
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| T |
29838141 |
ataatcagtattttgtcttacagagagcatacatcaaacaccggggtctagcacaagtggttggtgcgcatggtgtgtaaatggtttaaacatcgaggta |
29838042 |
T |
|
| Q |
401 |
ctaacgaacaaacacaagatataccgtctttaactaatcctagaagaaccggcaagtaatcttcaagagcctgaagaagattagcgagcgttgaaccacc |
500 |
Q |
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| T |
29838041 |
ctaacgaacaaacacaagatttaccgtctttaactaatcctagaagaaccggcaagtaatcttcaagagcctgaagaagattagcgagcgttgaaccacc |
29837942 |
T |
|
| Q |
501 |
tgaagatgaaatcaaacgacacagatgcatcaataaattacaacacaacttatatatcatagaataattttacctttgct |
580 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29837941 |
tgaagatgaaatcacacgacaccgatgcatcaataaattacaacacaacttatatatcatagaataattttacctttgct |
29837862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 34628176 - 34628284
Alignment:
| Q |
13 |
tggatgatcttggaagcagcagcaaattagcctttgacagtaatagcattgacatcaaatgcaaaaccgacaacacctcataccaagcattagacatggt |
112 |
Q |
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|||||| ||||||||| || | |||||||||| ||| || ||||| ||| |||||| ||||| || |||||||| |||||||||||||||||||||| |
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| T |
34628176 |
tggatgttcttggaagaagtaataaattagcctgtgatagcaatagtgttgccatcaagtgcaagactgacaacacttcataccaagcattagacatggc |
34628275 |
T |
|
| Q |
113 |
tgtttcctg |
121 |
Q |
| |
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||||||||| |
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| T |
34628276 |
tgtttcctg |
34628284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 422 - 513
Target Start/End: Original strand, 34628535 - 34628626
Alignment:
| Q |
422 |
taccgtctttaactaatcctagaagaaccggcaagtaatcttcaagagcctgaagaagattagcgagcgttgaaccacctgaagatgaaatc |
513 |
Q |
| |
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|||| ||||| |||||||| | ||| ||||| ||||| |||||||||||||| ||||||| ||| || |||||||| ||||| ||||||||| |
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| T |
34628535 |
taccatctttgactaatcccaaaagtaccggtaagtagtcttcaagagcctgtagaagatcagccagtgttgaacctcctgaggatgaaatc |
34628626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 34628391 - 34628451
Alignment:
| Q |
216 |
tacctctttttcatcttcttggttcatccaaacaaactgtactttgtattgtaaatgactt |
276 |
Q |
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||||||| |||||| || || |||||||||||||| |||||||||||||||||||||||| |
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| T |
34628391 |
tacctctgcttcatcctcctgattcatccaaacaaattgtactttgtattgtaaatgactt |
34628451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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