View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9864_low_10 (Length: 249)
Name: NF9864_low_10
Description: NF9864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9864_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 21434442 - 21434682
Alignment:
| Q |
1 |
aatgattcagaagtcgccactttt-atagaaaatgtatgaaaatgttgctaacaaatgttgtaggtatggcggatgcataaagataatctgatattgatg |
99 |
Q |
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| T |
21434442 |
aatgattcagaagtcgccactttttatagaaaatgtatgaaaatgttgctaacaaatgttgtaggtatggcggatgcataaagataatctgatattgatg |
21434541 |
T |
|
| Q |
100 |
gagagataccaccttttcaattcaagttgccaggaattcgacctcaattgcaaatcacttgctgagttgcatattgatgaaaatgaaactgatggagcgc |
199 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21434542 |
gagagataccactttttcaattcaagttgccaggaattcgacctcaattgcaaatcacttgctgagttgcatattgatgaaaatgaaactgatggagcgc |
21434641 |
T |
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| Q |
200 |
ttgccagaattctcaaagtgcttagacatatcaacaccaaa |
240 |
Q |
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| T |
21434642 |
ttgccagaattctcaaagtgcttagacatatcaactccaaa |
21434682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 53 - 234
Target Start/End: Original strand, 26990328 - 26990509
Alignment:
| Q |
53 |
aaatgttgtaggtatggcggatgcataaagataatctgatattgatggagagataccaccttttcaattcaagttgccaggaattcgacctcaattgcaa |
152 |
Q |
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| T |
26990328 |
aaatgttgtaggtatggccgaagtacagagataatctgatattgatggagagataccactttttcaattcaagttgtcaggacttcggcctccaatgcaa |
26990427 |
T |
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| Q |
153 |
atcacttgctgagttgcatattgatgaaaatgaaactgatggagcgcttgccagaattctcaaagtgcttagacatatcaac |
234 |
Q |
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| T |
26990428 |
atcacttgctgcattgaatattgatgagaatgaaaatgatggtgcgcttgccaaaatactcgaagtgctaagacagatcaac |
26990509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 54 - 234
Target Start/End: Original strand, 27029211 - 27029391
Alignment:
| Q |
54 |
aatgttgtaggtatggcggatgcataaagataatctgatattgatggagagataccaccttttcaattcaagttgccaggaattcgacctcaattgcaaa |
153 |
Q |
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||||||||||||||||| || | | | ||||||||||||||||||||||||||||||| |||||||||||||||| ||||| || | |||| | |||||| |
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| T |
27029211 |
aatgttgtaggtatggccgaagtacagagataatctgatattgatggagagataccactttttcaattcaagttgtcaggactttggcctccaatgcaaa |
27029310 |
T |
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| Q |
154 |
tcacttgctgagttgcatattgatgaaaatgaaactgatggagcgcttgccagaattctcaaagtgcttagacatatcaac |
234 |
Q |
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| T |
27029311 |
tcacttgctgcattgaatattgatgagaatgaaactgatggtgcgcttgccaaaatactcgaagtgctaagacagatcaac |
27029391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 81 - 234
Target Start/End: Complemental strand, 27074576 - 27074423
Alignment:
| Q |
81 |
agataatctgatattgatggagagataccaccttttcaattcaagttgccaggaattcgacctcaattgcaaatcacttgctgagttgcatattgatgaa |
180 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||| ||||| || | |||| | |||||||||||| || |||||||||||||| |
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| T |
27074576 |
agataatctgatattgatggagagataccactttttcaattcaagttgtcaggactttggcctccaacgcaaatcacttgttgcattgcatattgatgag |
27074477 |
T |
|
| Q |
181 |
aatgaaactgatggagcgcttgccagaattctcaaagtgcttagacatatcaac |
234 |
Q |
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| T |
27074476 |
aatgaaactgatggtgcgcttgccaaaatactcgaagtgctaagacagatcaac |
27074423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 27153304 - 27153358
Alignment:
| Q |
37 |
tgaaaatgttgctaacaaatgttgtaggtatggcggatgcataaagataatctga |
91 |
Q |
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| T |
27153304 |
tgaaaatgttgctaacaaatgttgtaggtatggcagaagcacaaagataatctga |
27153358 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 53 - 234
Target Start/End: Original strand, 34692585 - 34692766
Alignment:
| Q |
53 |
aaatgttgtaggtatggcggatgcataaagataatctgatattgatggagagataccaccttttcaattcaagttgccaggaattcgacctcaattgcaa |
152 |
Q |
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|||||||||||||||||| || | | | ||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||| |||| | ||||| |
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| T |
34692585 |
aaatgttgtaggtatggccgaagtacagagataatctgatattgatggagagataccactttttcaattcaagttgtcaggacttcggcctccaatgcaa |
34692684 |
T |
|
| Q |
153 |
atcacttgctgagttgcatattgatgaaaatgaaactgatggagcgcttgccagaattctcaaagtgcttagacatatcaac |
234 |
Q |
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| T |
34692685 |
atcacttgctgcattgaatattgatgagaatgaaattgatggtgcgcttgccaaaatactcgaagtgctaagacagatcaac |
34692766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 203
Target Start/End: Complemental strand, 50172351 - 50172191
Alignment:
| Q |
43 |
tgttgctaacaaatgttgtaggtatggcggatgcataaagataatctgatattgatggagagataccaccttttcaattcaagttgccaggaattcgacc |
142 |
Q |
| |
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||||||||| |||||||||||| |||| || ||||||| | ||||||||||||||||| |||||||| |||| |||||| || | | | || | | |
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| T |
50172351 |
tgttgctaaaaaatgttgtaggcatggatgaagcataaaaacaatctgatattgatggaaagataccatttttttgcttcaagctgtcggcagtttggct |
50172252 |
T |
|
| Q |
143 |
tcaattgcaaatcacttgctgagttgcatattgatgaaaatgaaactgatggagcgcttgc |
203 |
Q |
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||||||||||||| |||||||| | | | |||||||||||||| |||||||| ||||| |
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| T |
50172251 |
tcaattgcaaatctcttgctgaaacgaagagcgatgaaaatgaaacagatggagcacttgc |
50172191 |
T |
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