View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9864_low_13 (Length: 237)
Name: NF9864_low_13
Description: NF9864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9864_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 33460227 - 33460023
Alignment:
| Q |
16 |
agagtggaggggacgaacctgatttctggaaaggccagtctgtcttgctaagagatgcttatctgcatcactcgggtacctgaggaaagagaccagaaaa |
115 |
Q |
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| T |
33460227 |
agagtggaggggacgaacctgatttctggaaaggccagtctgtcttgctaagagatgcttatctgcatcactcgggtacctgaggaaagagaccagaaaa |
33460128 |
T |
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| Q |
116 |
tgacatcacactcatttcccttaaccgtataaacacacattcacctttctctaatattactatacattcaatttatatcatatcataacatttctttctg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33460127 |
tgacatcacactcatttcccttaaccgtataaacacacattcacctttctctaatattactatacattcaatttatatcatatcataacatttctttctg |
33460028 |
T |
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| Q |
216 |
tctgt |
220 |
Q |
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||||| |
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| T |
33460027 |
tctgt |
33460023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 148
Target Start/End: Original strand, 7061953 - 7062074
Alignment:
| Q |
28 |
acgaacctgatttctggaaaggccagtctgtcttgctaagagatgcttatctgcatcactcgggtacctgaggaaagagacc---agaaaatgacatcac |
124 |
Q |
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| T |
7061953 |
acgaacctgatttcgtgatagcccagtttgtcgtgccaatagatgcttatctgcatcacttggatacctga-gaaagagaccaaaagaaaatgacatcaa |
7062051 |
T |
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| Q |
125 |
actcatttcccttaaccgtataaa |
148 |
Q |
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| T |
7062052 |
agtc-cttcccttaaccatataaa |
7062074 |
T |
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