View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9864_low_15 (Length: 219)
Name: NF9864_low_15
Description: NF9864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9864_low_15 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 103534 - 103742
Alignment:
| Q |
1 |
ctcatcttacagttgagagaagaactccatactcagccttatgaaaaaattaactggacgaaatcacgtcacctatgtgcaaaggtgagagtcattgtct |
100 |
Q |
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| T |
103534 |
ctcatcttacagttgagagaagaactccatactcagccttatgaaaaaattaactggacgaaatcacgtcacctatgtgcaaaggtgagagtcattgtct |
103633 |
T |
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| Q |
101 |
ttaattgtttacaatgtgtggatttacacttcctctttatcatgataataggagggataatgatctattttatgtctcacaggaagatatttactatccc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
103634 |
ttaattgtttacaatgtgtggatttacacttcctctttatcatgataataggagggataatgatctattttatgtctcacaggaagatatttactatccc |
103733 |
T |
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| Q |
201 |
catcctttg |
209 |
Q |
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||||||||| |
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| T |
103734 |
catcctttg |
103742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 164500 - 164702
Alignment:
| Q |
1 |
ctcatcttacagttgagagaagaactccatactcagccttatgaaaaaattaactggacgaaatcacgtcacctatgtgcaaaggtgagagtcattgtct |
100 |
Q |
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| T |
164500 |
ctcatcttacagttgagagaagaactccatacccaaccttatgaaaaaactaattggacgaaatcacgtcacctatgtgcaaaggttagagtctttatct |
164599 |
T |
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| Q |
101 |
ttaattgtttacaatgtgtggatttacacttcctctttatcatgataataggagggataatgatctattttatgtctcacaggaagatatttactatccc |
200 |
Q |
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| T |
164600 |
ttaattgatcacaatgtgtgaaattacacatcctttttaac------ataggagggataatgatccattttatgtctcataggaagatctttactatccc |
164693 |
T |
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| Q |
201 |
catcctttg |
209 |
Q |
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| T |
164694 |
catcctttg |
164702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 209
Target Start/End: Complemental strand, 92763 - 92566
Alignment:
| Q |
5 |
tcttacagttgagagaagaactccatactcagccttatgaaaaaattaactggacgaaatcacgtcacctatgtgcaaaggtgagagtcattgtctttaa |
104 |
Q |
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| T |
92763 |
tcttacagttgagagaagaacttcatactcaaccttatggtaaagttaactggaaaaaagcacgccacctatgtgcaaaggtgaggctctttgtctctaa |
92664 |
T |
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| Q |
105 |
ttgtttacaatgtgtggatttacacttcctctttatcatgataataggagggataatgatctattttatgtctc-acaggaagatatttactatccccat |
203 |
Q |
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| T |
92663 |
ttcatgacagtgtatgaatttacacat-ctctttaac------gtatgagggataatgttccattttatg-ctcaacaggaagatatctactatcctcat |
92572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 13052459 - 13052551
Alignment:
| Q |
1 |
ctcatcttacagttgagagaagaactccatactcagccttatgaaaaaattaactggacgaaatcacgtcacctatgtgcaaaggtgagagtc |
93 |
Q |
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|||||||||||||||||||||||| | |||| ||| ||||| |||||| || | ||| ||||||||||||| ||||||||||||||||||| |
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| T |
13052459 |
ctcatcttacagttgagagaagaaattcataatcaaccttacgaaaaagttgattggttcaaatcacgtcaccaatgtgcaaaggtgagagtc |
13052551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 12137763 - 12137677
Alignment:
| Q |
1 |
ctcatcttacagttgagagaagaactccatactcagccttatgaaaaaattaactggacgaaatcacgtcacctatgtgcaaaggtg |
87 |
Q |
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| T |
12137763 |
ctcatcttacagttgagagaagaactctatactgaaccttatgcaaaagttaattggaaaaaagcacgtcaccagtgtgcgaaggtg |
12137677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 5722556 - 5722471
Alignment:
| Q |
4 |
atcttacagttgagagaagaactccatactcagccttatgaaaaaattaactggacgaaatcacgtcacctatgtgcaaaggtgag |
89 |
Q |
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| T |
5722556 |
atcttaaagttgagagaagaactccttacagaaccttatgaaaaagttaattggcaaaaagtacgtcacctatgtgcaaaggtgag |
5722471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 5670445 - 5670357
Alignment:
| Q |
1 |
ctcatcttacagttgagagaagaactccatactcagccttatgaaaaaattaactggacgaaatcacgtcacctatgtgcaaaggtgag |
89 |
Q |
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||||||||| |||||||||||||||||| ||| | | |||||||||| |||| ||| ||| ||| || ||||||||||||||||| |
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| T |
5670445 |
ctcatcttaaagttgagagaagaactccttacagaacattatgaaaaagttaattggcaaaaagtacgccatctatgtgcaaaggtgag |
5670357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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