View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9864_low_3 (Length: 441)
Name: NF9864_low_3
Description: NF9864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9864_low_3 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 152 - 431
Target Start/End: Original strand, 13052366 - 13052645
Alignment:
| Q |
152 |
ttaattgcagctaaaatgtggtgttattgtcgattggtatacatgcctatgtcttacttgtacgggaagaggtttgtgggtcgaatcacaccactcatct |
251 |
Q |
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||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13052366 |
ttaattgtaggtaaaatgtggtgttattgtcgattgacatacatgcctatgtcttacttgtacgggaagaggtttgtgggtcgaatcacaccactcatct |
13052465 |
T |
|
| Q |
252 |
tacagttgagagaagaaattcataatcaaccttacgaaaaagttgattggtcaaaatcacgtcaccaatgtgcaaaggtgagagtcatagtcgtgttcga |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
13052466 |
tacagttgagagaagaaattcataatcaaccttacgaaaaagttgattggttcaaatcacgtcaccaatgtgcaaaggtgagagtcgtagtcgtgtttga |
13052565 |
T |
|
| Q |
352 |
acgataacatacataggagggataaatgatccattttatgtcgacccgtacaggaagatctttactatcctcatcctttg |
431 |
Q |
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| T |
13052566 |
atgataacatacataggagggataaatgatccattttatgtcgtctcatacaggaagatctttactatcctcatcctttg |
13052645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 13052242 - 13052274
Alignment:
| Q |
5 |
ccttcatttcttcctatgcatccaggttcaatt |
37 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
13052242 |
ccttcatttcttcctatgcatccaggttcaatt |
13052274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 94 - 339
Target Start/End: Original strand, 103383 - 103628
Alignment:
| Q |
94 |
gcaaaagaattatggagttgagagtttatatttgatctcattttcatcctaatttaatttaattgcagctaaaatgtggtgttattgtcgattggtatac |
193 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
103383 |
gcaatagaattatggagttgagagtttatatttgatctcattttcatcctaatttaatttaattgcagctaaaatgtggtgttattgtcgattggtatac |
103482 |
T |
|
| Q |
194 |
atgcctatgtcttacttgtacgggaagaggtttgtgggtcgaatcacaccactcatcttacagttgagagaagaaattcataatcaaccttacgaaaaag |
293 |
Q |
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||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| | |||| ||| ||||| |||||| |
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| T |
103483 |
atgcctatgtcttacttgtacgggaagagatttgtgggtccgatcacaccactcatcttacagttgagagaagaactccatactcagccttatgaaaaaa |
103582 |
T |
|
| Q |
294 |
ttgattggtcaaaatcacgtcaccaatgtgcaaaggtgagagtcat |
339 |
Q |
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|| | ||| | ||||||||||||| ||||||||||||||||||||| |
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| T |
103583 |
ttaactggacgaaatcacgtcacctatgtgcaaaggtgagagtcat |
103628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 159 - 337
Target Start/End: Original strand, 164414 - 164592
Alignment:
| Q |
159 |
cagctaaaatgtggtgttattgtcgattggtatacatgcctatgtcttacttgtacgggaagaggtttgtgggtcgaatcacaccactcatcttacagtt |
258 |
Q |
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||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
164414 |
cagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacagtt |
164513 |
T |
|
| Q |
259 |
gagagaagaaattcataatcaaccttacgaaaaagttgattggtcaaaatcacgtcaccaatgtgcaaaggtgagagtc |
337 |
Q |
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|||||||||| | |||| |||||||| |||||| | ||||| | ||||||||||||| |||||||||||| |||||| |
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| T |
164514 |
gagagaagaactccatacccaaccttatgaaaaaactaattggacgaaatcacgtcacctatgtgcaaaggttagagtc |
164592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 103286 - 103356
Alignment:
| Q |
1 |
ccttccttcatttcttcctatgcatccaggttcaattctttgaattcttttgtgctaatctctttggaaca |
71 |
Q |
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|
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| T |
103286 |
ccttccttcatttcttcctatgcatccaggttcaattctttgaattcttttgtgctaatctctttggaaca |
103356 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 162557 - 162593
Alignment:
| Q |
1 |
ccttccttcatttcttcctatgcatccaggttcaatt |
37 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
162557 |
ccttccttcatttcttcctatgcatccaggttcaatt |
162593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 153 - 331
Target Start/End: Complemental strand, 12137855 - 12137677
Alignment:
| Q |
153 |
taattgcagctaaaatgtggtgttattgtcgattggtatacatgcctatgtcttacttgtacgggaagaggtttgtgggtcgaatcacaccactcatctt |
252 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| ||||||||| ||||||||| |||||||| |
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| T |
12137855 |
taattgcagctaaaatgtggtgttactgtcgattggtatacatgcctatgtcttacttgtatggaaagagatttgtgggttcaatcacaccgctcatctt |
12137756 |
T |
|
| Q |
253 |
acagttgagagaagaaattcataatcaaccttacgaaaaagttgattggtcaaaatcacgtcaccaatgtgcaaaggtg |
331 |
Q |
| |
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|||||||||||||||| | ||| | ||||||| | ||||||| ||||| |||| |||||||||| ||||| |||||| |
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| T |
12137755 |
acagttgagagaagaactctatactgaaccttatgcaaaagttaattggaaaaaagcacgtcaccagtgtgcgaaggtg |
12137677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 151 - 333
Target Start/End: Complemental strand, 92861 - 92679
Alignment:
| Q |
151 |
tttaattgcagctaaaatgtggtgttattgtcgattggtatacatgcctatgtcttacttgtacgggaagaggtttgtgggtcgaatcacaccactcatc |
250 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||| |||||||| | || ||||||||||||||||| ||||||||||| |||| ||||||||||||| || |
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| T |
92861 |
tttaatttcagctaaaatgtggtgctattgtcgactggtatacttaccgatgtcttacttgtacggaaagaggtttgtcggtccaatcacaccactcgtc |
92762 |
T |
|
| Q |
251 |
ttacagttgagagaagaaattcataatcaaccttacgaaaaagttgattggtcaaaatcacgtcaccaatgtgcaaaggtgag |
333 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||| | |||||| | ||| |||| |||| |||| ||||||||||||||| |
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|
| T |
92761 |
ttacagttgagagaagaacttcatactcaaccttatggtaaagttaactggaaaaaagcacgccacctatgtgcaaaggtgag |
92679 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 159 - 333
Target Start/End: Complemental strand, 5722645 - 5722471
Alignment:
| Q |
159 |
cagctaaaatgtggtgttattgtcgattggtatacatgcctatgtcttacttgtacgggaagaggtttgtgggtcgaatcacaccactcatcttacagtt |
258 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||| |||||||||| | |||||| |||| |
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| T |
5722645 |
cagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgatcttaaagtt |
5722546 |
T |
|
| Q |
259 |
gagagaagaaattcataatcaaccttacgaaaaagttgattggtcaaaatcacgtcaccaatgtgcaaaggtgag |
333 |
Q |
| |
|
|||||||||| | | || ||||||| ||||||||| ||||| |||| |||||||| ||||||||||||||| |
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| T |
5722545 |
gagagaagaactccttacagaaccttatgaaaaagttaattggcaaaaagtacgtcacctatgtgcaaaggtgag |
5722471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 159 - 333
Target Start/End: Complemental strand, 5670531 - 5670357
Alignment:
| Q |
159 |
cagctaaaatgtggtgttattgtcgattggtatacatgcctatgtcttacttgtacgggaagaggtttgtgggtcgaatcacaccactcatcttacagtt |
258 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||| ||||||||||||||| |||| |
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| T |
5670531 |
cagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatgggaagaggtttgtcggtccaataacaccactcatcttaaagtt |
5670432 |
T |
|
| Q |
259 |
gagagaagaaattcataatcaaccttacgaaaaagttgattggtcaaaatcacgtcaccaatgtgcaaaggtgag |
333 |
Q |
| |
|
|||||||||| | | || ||| ||| ||||||||| ||||| |||| ||| || | ||||||||||||||| |
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|
| T |
5670431 |
gagagaagaactccttacagaacattatgaaaaagttaattggcaaaaagtacgccatctatgtgcaaaggtgag |
5670357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 159 - 333
Target Start/End: Complemental strand, 5692305 - 5692131
Alignment:
| Q |
159 |
cagctaaaatgtggtgttattgtcgattggtatacatgcctatgtcttacttgtacgggaagaggtttgtgggtcgaatcacaccactcatcttacagtt |
258 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||| |||||||||| | | |||| |||| |
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| T |
5692305 |
cagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgaccttaaagtt |
5692206 |
T |
|
| Q |
259 |
gagagaagaaattcataatcaaccttacgaaaaagttgattggtcaaaatcacgtcaccaatgtgcaaaggtgag |
333 |
Q |
| |
|
|||||||||| | | || ||||||| ||||||||| ||||| |||| ||| || | ||||||||||||||| |
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|
| T |
5692205 |
gagagaagaactccttacagaaccttatgaaaaagttaattggcaaaaagtacgccatctatgtgcaaaggtgag |
5692131 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 1942043 - 1941994
Alignment:
| Q |
195 |
tgcctatgtcttacttgtacgggaagaggtttgtgggtcgaatcacacca |
244 |
Q |
| |
|
|||| |||| |||||||||||| ||||||||||| |||| |||||||||| |
|
|
| T |
1942043 |
tgccaatgtgttacttgtacggaaagaggtttgttggtccaatcacacca |
1941994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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