View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9864_low_4 (Length: 419)
Name: NF9864_low_4
Description: NF9864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9864_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 186 - 409
Target Start/End: Original strand, 30260302 - 30260530
Alignment:
| Q |
186 |
tgatcgtaattaaattgtaggccacatgaaaggaaaaacatatacgtaacagtaatacaagaataatttaatttctatgatattttgnnnnnnnnnnnnn |
285 |
Q |
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| T |
30260302 |
tgatcgtaattgaattgtaggccacatgaaaggaaaaacatatacgtaacaataatacaagaataatttaatttctatgatattttgaaaaaggaaaaaa |
30260401 |
T |
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| Q |
286 |
taatatgatgatatatggagtcagatctataacagaa-----aagaaaagaatcgaatgaaggcacataacataacttagtgacaaagacttacccttta |
380 |
Q |
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| T |
30260402 |
taattagatgatatatggagtcagatctataacagaaaagaaaagaaaagaatcgaatgaaggcacataacataacttagtgacaaagacttacccttta |
30260501 |
T |
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| Q |
381 |
tagttagttttgtttgtttgttgtctctg |
409 |
Q |
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| T |
30260502 |
tagttagttttgtttgtttgttgtctctg |
30260530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 30260198 - 30260258
Alignment:
| Q |
1 |
ctaaacacactctttatctgtgttgccaaaccaggtactaagccaaaaaaggacaaggcaa |
61 |
Q |
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| T |
30260198 |
ctaaacacactgtttatctgtgttgccaaaccagctactaagccaaaaaaggacaaggcaa |
30260258 |
T |
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