View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9865_10 (Length: 300)

Name: NF9865_10
Description: NF9865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9865_10
NF9865_10
[»] chr1 (8 HSPs)
chr1 (10-289)||(15035514-15035793)
chr1 (130-289)||(14502740-14502899)
chr1 (21-140)||(14524472-14524591)
chr1 (10-140)||(14502188-14502318)
chr1 (10-140)||(14534449-14534579)
chr1 (130-283)||(14523897-14524050)
chr1 (201-260)||(14534329-14534388)
chr1 (13-103)||(14466084-14466174)
[»] scaffold0400 (2 HSPs)
scaffold0400 (10-289)||(10985-11264)
scaffold0400 (10-78)||(5489-5557)
[»] scaffold0365 (2 HSPs)
scaffold0365 (10-289)||(11628-11907)
scaffold0365 (10-78)||(6133-6201)


Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 10 - 289
Target Start/End: Original strand, 15035514 - 15035793
Alignment:
Q  10 atattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaactatcgta 109  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  15035514 atattggtgtaatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtacaaactatccta 15035613  T
Q  110 tcttgatctcagctttaattatctcactgggtctatctcaatttctataggaaagttggccaaaataacaaatctcaagttacattccaatcaacttttt 209  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||    
T  15035614 tcttgatctcagctttaattatctcaccgggtctatctcaatttctataggaaagttggccaaaataaaaaatctcatgttacattcgaatcaacttttt 15035713  T
Q  210 ggccacattcctcatgaaattgggaatttagtcaacctccagagactagatcttggaaataacagtctttctggcttcat 289  Q
    ||||| ||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  15035714 ggccagattcctcgtgaaattgggaatttggtcaacctccagagactatatcttggaaataacagtctttttggcttcat 15035793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 130 - 289
Target Start/End: Original strand, 14502740 - 14502899
Alignment:
Q  130 atctcactgggtctatctcaatttctataggaaagttggccaaaataacaaatctcaagttacattccaatcaactttttggccacattcctcatgaaat 229  Q
    ||||||||||||||||| | ||||||||||||| ||||||||| ||| |||||||    ||| |||||||||||||| ||||||| ||||||| ||||||    
T  14502740 atctcactgggtctatccctatttctataggaatgttggccaatatatcaaatctttttttatattccaatcaacttattggccaaattcctcgtgaaat 14502839  T
Q  230 tgggaatttagtcaacctccagagactagatcttggaaataacagtctttctggcttcat 289  Q
    ||||||||| ||||||||||| |||||| |||||||||||||||  ||||||||||||||    
T  14502840 tgggaatttggtcaacctccaaagactatatcttggaaataacaacctttctggcttcat 14502899  T

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Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 14524591 - 14524472
Alignment:
Q  21 atgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaactatcgtatcttgatctca 120  Q
    |||| ||||||||| ||||||||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||||| |||||||| ||||||||||| |    
T  14524591 atgtgcaatctagacactcttgatttgtcactaaataaactctctggtagcattcacaatagcattggtaatttgtcaaaactatcctatcttgatctta 14524492  T
Q  121 gctttaattatctcactggg 140  Q
    |||| |||||||||||||||    
T  14524491 gcttcaattatctcactggg 14524472  T

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Target: chr1; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 14502188 - 14502318
Alignment:
Q  10 atattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaactatcgta 109  Q
    ||||||| |||||||| || ||||| ||||||||||||||||||||| | |||||||||| ||||||||| |   |||||||||||||||||||||| ||    
T  14502188 atattggagtgatgtcaaacctagacactcttgatttgtcactaaataatctctctggtaacattcccaaaagtgttggtaatttgtccaaactatctta 14502287  T
Q  110 tcttgatctcagctttaattatctcactggg 140  Q
    |||||||||||| || |||||||||| ||||    
T  14502288 tcttgatctcagtttcaattatctcattggg 14502318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 10 - 140
Target Start/End: Complemental strand, 14534579 - 14534449
Alignment:
Q  10 atattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaactatcgta 109  Q
    ||||||| | |||||| | |||| ||||||||||||||||| | ||  | |||||||||||||||||||||| ||||||||||||||| ||| |||| ||    
T  14534579 atattggagagatgtctagtctaaaaactcttgatttgtcagttaacaatctctctggtaccattcccaatagcattggtaatttgtcaaaaatatctta 14534480  T
Q  110 tcttgatctcagctttaattatctcactggg 140  Q
    |||||||||||| || |||||||||||||||    
T  14534479 tcttgatctcagtttcaattatctcactggg 14534449  T

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Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 130 - 283
Target Start/End: Complemental strand, 14524050 - 14523897
Alignment:
Q  130 atctcactgggtctatctcaatttctataggaaagttggccaaaataacaaatctcaagttacattccaatcaactttttggccacattcctcatgaaat 229  Q
    ||||||||||||| ||||| | |||||||||||| ||| |||| ||| || ||||| ||||| |   ||| ||||||||||||||||||||||  |||||    
T  14524050 atctcactgggtcaatctctacttctataggaaaattgaccaatatatcatatctccagttataccacaaccaactttttggccacattcctcgcgaaat 14523951  T
Q  230 tgggaatttagtcaacctccagagactagatcttggaaataacagtctttctgg 283  Q
    ||||||||| ||||||||| ||| |||  |||||||| |||| | |||||||||    
T  14523950 tgggaatttggtcaacctcaagaaactcaatcttggatataataatctttctgg 14523897  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 14534388 - 14534329
Alignment:
Q  201 caactttttggccacattcctcatgaaattgggaatttagtcaacctccagagactagat 260  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||||||  |||||||||||    
T  14534388 caacttattggccacattcctcgtgaaattgggaatttggtcaaccttgagagactagat 14534329  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 14466084 - 14466174
Alignment:
Q  13 ttggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaact 103  Q
    |||| |||| |||||||||||| ||| |||| ||||||   |||||||||||||||   ||||||| ||||||||||  | ||||||||||    
T  14466084 ttggtgtgaagtccaatctagatactattgagttgtcatataatgaactctctggtcatattcccagtaccattggttttctgtccaaact 14466174  T

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Target: scaffold0400 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 10 - 289
Target Start/End: Original strand, 10985 - 11264
Alignment:
Q  10 atattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaactatcgta 109  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||| ||    
T  10985 atattggtgtaatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtagcgttcccaataccattggtaatttctccaaactatccta 11084  T
Q  110 tcttgatctcagctttaattatctcactgggtctatctcaatttctataggaaagttggccaaaataacaaatctcaagttacattccaatcaacttttt 209  Q
    |||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  11085 tcttgatctcagctttaattatctcagtgggtctatctctatttctttaggaaagttggccaaaataacaaatctcaagttacattccaatcaacttttc 11184  T
Q  210 ggccacattcctcatgaaattgggaatttagtcaacctccagagactagatcttggaaataacagtctttctggcttcat 289  Q
    ||||||||||||| |||||| || |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  11185 ggccacattcctcgtgaaataggaaatttagtcaacctccagagactatatcttggaaataacagcctttctggcttcat 11264  T

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Target: scaffold0400; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 5489 - 5557
Alignment:
Q  10 atattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattccca 78  Q
    |||||||||||||||| ||||| |||||||||||||| ||||| |||  ||||||||||| ||||||||    
T  5489 atattggggtgatgtcaaatctggaaactcttgatttatcacttaatagactctctggtaacattccca 5557  T

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Target: scaffold0365 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 10 - 289
Target Start/End: Original strand, 11628 - 11907
Alignment:
Q  10 atattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaactatcgta 109  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||| ||    
T  11628 atattggtgtaatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtagcgttcccaataccattggtaatttctccaaactatccta 11727  T
Q  110 tcttgatctcagctttaattatctcactgggtctatctcaatttctataggaaagttggccaaaataacaaatctcaagttacattccaatcaacttttt 209  Q
    |||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  11728 tcttgatctcagctttaattatctcagtgggtctatctctatttctttaggaaagttggccaaaataacaaatctcaagttacattccaatcaacttttc 11827  T
Q  210 ggccacattcctcatgaaattgggaatttagtcaacctccagagactagatcttggaaataacagtctttctggcttcat 289  Q
    ||||||||||||| |||||| || |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  11828 ggccacattcctcgtgaaataggaaatttagtcaacctccagagactatatcttggaaataacagcctttctggcttcat 11907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 6133 - 6201
Alignment:
Q  10 atattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattccca 78  Q
    |||||||||||||||| ||||| |||||||||||||| ||||| |||  ||||||||||| ||||||||    
T  6133 atattggggtgatgtcaaatctggaaactcttgatttatcacttaatagactctctggtaacattccca 6201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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