View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9867_low_1 (Length: 627)

Name: NF9867_low_1
Description: NF9867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9867_low_1
NF9867_low_1
[»] chr1 (2 HSPs)
chr1 (138-615)||(17309786-17310263)
chr1 (16-80)||(17310321-17310385)
[»] chr7 (5 HSPs)
chr7 (546-609)||(20186163-20186226)
chr7 (527-610)||(10868022-10868105)
chr7 (552-609)||(10866329-10866387)
chr7 (299-473)||(16363573-16363748)
chr7 (528-565)||(3458835-3458872)
[»] chr4 (5 HSPs)
chr4 (528-609)||(15041637-15041718)
chr4 (528-609)||(15112706-15112787)
chr4 (528-609)||(15039908-15039989)
chr4 (528-609)||(15114435-15114516)
chr4 (527-610)||(16003538-16003620)
[»] chr8 (2 HSPs)
chr8 (544-609)||(22692451-22692518)
chr8 (374-415)||(24072590-24072631)
[»] chr6 (6 HSPs)
chr6 (527-609)||(30579990-30580071)
chr6 (446-494)||(16326492-16326540)
chr6 (446-494)||(16349890-16349938)
chr6 (374-416)||(23769291-23769333)
chr6 (552-600)||(13214011-13214059)
chr6 (528-603)||(34244769-34244844)
[»] chr3 (1 HSPs)
chr3 (527-609)||(19844733-19844815)
[»] chr5 (1 HSPs)
chr5 (527-609)||(33566768-33566851)
[»] chr2 (1 HSPs)
chr2 (374-424)||(45203578-45203628)


Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 138 - 615
Target Start/End: Complemental strand, 17310263 - 17309786
Alignment:
Q  138 gaaggaccagcatatactttatttgttccagacggtctggaagcccacaaagcaaagctctttaagtcaaagcctaaaaactagggagaacacagcaatg 237  Q
    |||||| |||||||||| |||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  17310263 gaaggagcagcatatacgttatttgttctagacggtctagaagcccacaaagcaaagctcgttaagtcaaagcctaaaaactagggagaacacagcgatg 17310164  T
Q  238 gagcacacgaagtcctgtgcgaaccaatgcacaggagcattccctgacactgtctcaaccatccagatcatcaacaacggccttctaagatggcgccaca 337  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17310163 gagcacacgaagtcctgtgcgaaccaatgcacaggagcattccctgacaccgtctcaaccgtccagatcatcaacaacggccttctaagatggcgccaca 17310064  T
Q  338 tctcacagggaccgttaagcgtcctccatgtctaggtaagggtgactcagtgtcaccctcaaggtacacttcagttttcttcactttagaatatgaccac 437  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17310063 tctcacagagaccgttaagcgtcctctatgtctaggtaagggtgactcagtgtcaccctcaaggtacacttcagttttcttcacttttgaatatgaccac 17309964  T
Q  438 ctccttagataccgacttgagcattggagtgttaacgtatctacatacacatttctccttttgtatattgaattgtgttaaaatgttagaattgaggtct 537  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17309963 ctccttagataccgacttgagcattggagtgttaacgtatctacatacacatttctccttttgaatattgaattgtgttaaaatgttagaattgaggtct 17309864  T
Q  538 ataaataagatcatccatgtactcattaattaatcttttttaatacaattcaatatgaattctaagggttttttctct 615  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17309863 ataaataagaccatccatgtactcattaattaatctttttcaatacaattcaatatgaattctaagggttttttctct 17309786  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 17310385 - 17310321
Alignment:
Q  16 cttgaggcattgccttgatcacgctaacatattatcattgccttgataatatcaaaatatttatg 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17310385 cttgaggcattgccttgatcacgctaacatattatcattgccttgataatatcaaaatatttatg 17310321  T

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Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 546 - 609
Target Start/End: Original strand, 20186163 - 20186226
Alignment:
Q  546 gatcatccatgtactcattaattaatcttttttaatacaattcaatatgaattctaagggtttt 609  Q
    ||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  20186163 gatcaaccatgtactcattcattaatctttttcaatacaattcaatatgaattctaagggtttt 20186226  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 527 - 610
Target Start/End: Original strand, 10868022 - 10868105
Alignment:
Q  527 aattgaggtctataaataagatcatccatgtactcattaat-taatcttttttaatacaattcaatatgaattctaagggttttt 610  Q
    |||||||||||||||| | || || ||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||    
T  10868022 aattgaggtctataaa-aggaccaaccatgtactcattcatataatctttttcaatacaattcaatatgaattctaagggttttt 10868105  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 552 - 609
Target Start/End: Original strand, 10866329 - 10866387
Alignment:
Q  552 ccatgtactcattaat-taatcttttttaatacaattcaatatgaattctaagggtttt 609  Q
    ||||||||||||| || |||||||||| ||||||||| |||||||||||||||||||||    
T  10866329 ccatgtactcattcatgtaatctttttcaatacaatttaatatgaattctaagggtttt 10866387  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 299 - 473
Target Start/End: Complemental strand, 16363748 - 16363573
Alignment:
Q  299 tccagatcatcaacaacggccttctaagatggcgccacatctcacagggaccgttaagcgtcctccatgtctaggtaagggtgactcagtgtcaccctca 398  Q
    ||||||||||||  |||||||| || ||||| || |||||||||  | ||||||||||||||||| | | ||   ||| ||||||||||  ||| |||||    
T  16363748 tccagatcatcactaacggcctacttagatgacgtcacatctcatggagaccgttaagcgtcctctacgcctttataaaggtgactcagcatcatcctca 16363649  T
Q  399 aggtacacttcagttttcttcactttagaatatgaccacctc-cttagataccgacttgagcattggagtgttaac 473  Q
    || | ||||||| ||||| ||||||| | | || ||||||||  |||||||  ||||||| | |||||||| ||||    
T  16363648 agttgcacttcatttttcatcacttttgcacataaccacctcatttagatattgacttgatcgttggagtgctaac 16363573  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 528 - 565
Target Start/End: Original strand, 3458835 - 3458872
Alignment:
Q  528 attgaggtctataaataagatcatccatgtactcatta 565  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  3458835 attgaggtctataaataagaccatacatgtactcatta 3458872  T

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Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 528 - 609
Target Start/End: Complemental strand, 15041718 - 15041637
Alignment:
Q  528 attgaggtctataaataagatcatccatgtactcattaat-taatcttttttaatacaattcaatatgaattctaagggtttt 609  Q
    ||||||||||||||| | || || ||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||    
T  15041718 attgaggtctataaa-aggaccaaccatgtactcattcatgtaatctttttcaatacaattcaatatgaattctaagggtttt 15041637  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 528 - 609
Target Start/End: Original strand, 15112706 - 15112787
Alignment:
Q  528 attgaggtctataaataagatcatccatgtactcattaat-taatcttttttaatacaattcaatatgaattctaagggtttt 609  Q
    ||||||||||||||| | || || ||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||    
T  15112706 attgaggtctataaa-aggaccaaccatgtactcattcatgtaatctttttcaatacaattcaatatgaattctaagggtttt 15112787  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 528 - 609
Target Start/End: Complemental strand, 15039989 - 15039908
Alignment:
Q  528 attgaggtctataaataagatcatccatgtactcattaat-taatcttttttaatacaattcaatatgaattctaagggtttt 609  Q
    ||||||||||||||| | || || ||||||||||||| || |||||||||| ||||||||||| |||||||||||||||||||    
T  15039989 attgaggtctataaa-aggaccaaccatgtactcattcatgtaatctttttcaatacaattcactatgaattctaagggtttt 15039908  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 528 - 609
Target Start/End: Original strand, 15114435 - 15114516
Alignment:
Q  528 attgaggtctataaataagatcatccatgtactcattaat-taatcttttttaatacaattcaatatgaattctaagggtttt 609  Q
    ||||||||||||||| | || || ||||||||||||| || |||||||||| ||||||||||| |||||||||||||||||||    
T  15114435 attgaggtctataaa-aggaccaaccatgtactcattcatgtaatctttttcaatacaattcactatgaattctaagggtttt 15114516  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 610
Target Start/End: Original strand, 16003538 - 16003620
Alignment:
Q  527 aattgaggtctataaataagatcatccatgtactcattaattaatcttttttaatacaattcaatatgaattctaagggttttt 610  Q
    |||||||||||||||| | || || |||| |||||||| || ||||||||| ||||||||| |  |||||||||||| ||||||    
T  16003538 aattgaggtctataaa-aggaccaaccatatactcattcatcaatctttttaaatacaatttataatgaattctaagagttttt 16003620  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 544 - 609
Target Start/End: Original strand, 22692451 - 22692518
Alignment:
Q  544 aagatcatccatgtactcatta--attaatcttttttaatacaattcaatatgaattctaagggtttt 609  Q
    |||| |||| ||||||||||||  || ||||||||| |||||||||||||||||||||||||||||||    
T  22692451 aagaccatctatgtactcattactataaatctttttcaatacaattcaatatgaattctaagggtttt 22692518  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 415
Target Start/End: Complemental strand, 24072631 - 24072590
Alignment:
Q  374 taagggtgactcagtgtcaccctcaaggtacacttcagtttt 415  Q
    ||||||||||||||  ||||||||||||||||||||| ||||    
T  24072631 taagggtgactcagcatcaccctcaaggtacacttcactttt 24072590  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 527 - 609
Target Start/End: Complemental strand, 30580071 - 30579990
Alignment:
Q  527 aattgaggtctataaataagatcatccatgtactcattaattaatcttttttaatacaattcaatatgaattctaagggtttt 609  Q
    ||||||||||||||| || ||||| ||||| ||||||| || ||||||||| | |||||||||  ||||||||||||||||||    
T  30580071 aattgaggtctataa-tatgatcaaccatgaactcattcatcaatctttttcattacaattcataatgaattctaagggtttt 30579990  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 446 - 494
Target Start/End: Original strand, 16326492 - 16326540
Alignment:
Q  446 ataccgacttgagcattggagtgttaacgtatctacatacacatttctc 494  Q
    |||||||||| ||| ||||||||||||||||||| |||||| |||||||    
T  16326492 ataccgacttaagcgttggagtgttaacgtatctgcatacatatttctc 16326540  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 446 - 494
Target Start/End: Original strand, 16349890 - 16349938
Alignment:
Q  446 ataccgacttgagcattggagtgttaacgtatctacatacacatttctc 494  Q
    |||||||||| ||| ||||||||||||||||||| |||||| |||||||    
T  16349890 ataccgacttaagcgttggagtgttaacgtatctgcatacatatttctc 16349938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 374 - 416
Target Start/End: Complemental strand, 23769333 - 23769291
Alignment:
Q  374 taagggtgactcagtgtcaccctcaaggtacacttcagttttc 416  Q
    |||||||||||||| |||||||||| |||||||| ||||||||    
T  23769333 taagggtgactcagcgtcaccctcatggtacactgcagttttc 23769291  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 13214059 - 13214011
Alignment:
Q  552 ccatgtactcattaattaatcttttttaatacaattcaatatgaattct 600  Q
    ||||||||| ||| || |||||||||||||||||||||  |||||||||    
T  13214059 ccatgtacttattcatcaatcttttttaatacaattcataatgaattct 13214011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 528 - 603
Target Start/End: Original strand, 34244769 - 34244844
Alignment:
Q  528 attgaggtctataaataagatcatccatgtactcattaat-taatcttttttaatacaattcaatatgaattctaag 603  Q
    ||||||||||||||| | || || |||| |||||||| || |||||||||| |||||||||||  ||||||||||||    
T  34244769 attgaggtctataaa-aggaccaaccatatactcattcatataatctttttcaatacaattcataatgaattctaag 34244844  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 527 - 609
Target Start/End: Complemental strand, 19844815 - 19844733
Alignment:
Q  527 aattgaggtctataaataagatcatccatgtactcatta--attaatcttttttaatacaattcaatatgaattctaagggtttt 609  Q
    ||||||||||||||||  ||| |||| ||||||||||||  || ||||||||| |||||||||||||||  ||||||||||||||    
T  19844815 aattgaggtctataaa--agaccatctatgtactcattactatcaatctttttcaatacaattcaatattcattctaagggtttt 19844733  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 527 - 609
Target Start/End: Complemental strand, 33566851 - 33566768
Alignment:
Q  527 aattgaggtctataaataagatcatccatgtactcattaat---taatcttttttaatacaattcaatatgaattctaagggtttt 609  Q
    |||| |||||||||||  ||| ||||||||||||||||| |   |||||||||| ||| |||||||||||||||||||| ||||||    
T  33566851 aatttaggtctataaa--agaccatccatgtactcattactctttaatctttttcaattcaattcaatatgaattctaatggtttt 33566768  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 374 - 424
Target Start/End: Original strand, 45203578 - 45203628
Alignment:
Q  374 taagggtgactcagtgtcaccctcaaggtacacttcagttttcttcacttt 424  Q
    |||| ||||||||| |||||| ||||||||||||||| ||||| |||||||    
T  45203578 taagagtgactcagcgtcaccatcaaggtacacttcacttttcatcacttt 45203628  T

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