View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9867_low_11 (Length: 280)

Name: NF9867_low_11
Description: NF9867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9867_low_11
NF9867_low_11
[»] chr3 (4 HSPs)
chr3 (6-208)||(49766558-49766757)
chr3 (123-204)||(24833092-24833173)
chr3 (129-208)||(34575490-34575569)
chr3 (221-272)||(49766431-49766486)
[»] chr5 (3 HSPs)
chr5 (131-207)||(12694508-12694584)
chr5 (129-203)||(42461227-42461301)
chr5 (134-208)||(12694211-12694285)
[»] chr2 (6 HSPs)
chr2 (129-205)||(5197848-5197924)
chr2 (129-203)||(41514954-41515028)
chr2 (132-203)||(4824236-4824307)
chr2 (132-203)||(38695375-38695446)
chr2 (129-203)||(41702219-41702293)
chr2 (131-203)||(615420-615492)
[»] chr1 (3 HSPs)
chr1 (124-208)||(23775158-23775242)
chr1 (132-203)||(43467536-43467607)
chr1 (135-201)||(43466644-43466710)
[»] chr8 (6 HSPs)
chr8 (124-203)||(35485385-35485464)
chr8 (124-203)||(36100760-36100839)
chr8 (130-203)||(10739710-10739783)
chr8 (132-203)||(9819670-9819741)
chr8 (129-203)||(36020483-36020557)
chr8 (133-203)||(6057516-6057586)
[»] chr4 (2 HSPs)
chr4 (130-203)||(30514361-30514434)
chr4 (132-203)||(38872579-38872650)
[»] scaffold0350 (1 HSPs)
scaffold0350 (133-203)||(16941-17011)
[»] scaffold0016 (1 HSPs)
scaffold0016 (150-193)||(38511-38554)


Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 6 - 208
Target Start/End: Complemental strand, 49766757 - 49766558
Alignment:
Q  6 agttgattcgtttatatgctaactgccattgtgatacaaacagaaatattgatgtcatcctaataaatcaatgactctataacattacgatataataata 105  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||       
T  49766757 agttgattcgtttatatgctaactgccactgtgatacaaacaaaaatattgatgtcatcctaataaatcaatgactctataaaattacgctataata--- 49766661  T
Q  106 ttaaaacacatccacgttaacatcaagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcaat 205  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49766660 ttaaaacatatccatgttaacatcaagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcaat 49766561  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 123 - 204
Target Start/End: Complemental strand, 24833173 - 24833092
Alignment:
Q  123 taacatcaagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcaa 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24833173 taacatcaagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcaa 24833092  T

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Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 129 - 208
Target Start/End: Complemental strand, 34575569 - 34575490
Alignment:
Q  129 caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcaattta 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34575569 caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcatttta 34575490  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 49766486 - 49766431
Alignment:
Q  221 caactaaattttatattcatcatc----atatcacatataattcaagaaaccacca 272  Q
    |||||||||||||||| |||||||    ||||||||||||||||||||||||||||    
T  49766486 caactaaattttatatacatcatcgatcatatcacatataattcaagaaaccacca 49766431  T

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Target: chr5 (Bit Score: 77; Significance: 9e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 12694584 - 12694508
Alignment:
Q  131 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcaattt 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12694584 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcaattt 12694508  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 129 - 203
Target Start/End: Complemental strand, 42461301 - 42461227
Alignment:
Q  129 caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42461301 caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 42461227  T

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Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 134 - 208
Target Start/End: Complemental strand, 12694285 - 12694211
Alignment:
Q  134 gtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcaattta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12694285 gtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcagttta 12694211  T

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Target: chr2 (Bit Score: 77; Significance: 9e-36; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 129 - 205
Target Start/End: Complemental strand, 5197924 - 5197848
Alignment:
Q  129 caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcaat 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5197924 caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcaat 5197848  T

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Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 41514954 - 41515028
Alignment:
Q  129 caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41514954 caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 41515028  T

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Target: chr2; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 132 - 203
Target Start/End: Complemental strand, 4824307 - 4824236
Alignment:
Q  132 gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4824307 gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 4824236  T

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Target: chr2; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 38695375 - 38695446
Alignment:
Q  132 gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38695375 gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 38695446  T

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Target: chr2; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 129 - 203
Target Start/End: Complemental strand, 41702293 - 41702219
Alignment:
Q  129 caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  41702293 caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggtttgactcccggcaaacgca 41702219  T

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Target: chr2; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 615420 - 615492
Alignment:
Q  131 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  615420 agcgtttgtagtccaacggttaggataattgccttccaagcaatagatccgggttcgactcccggcaaacgca 615492  T

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Target: chr1 (Bit Score: 77; Significance: 9e-36; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 124 - 208
Target Start/End: Original strand, 23775158 - 23775242
Alignment:
Q  124 aacatcaagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcaattta 208  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23775158 aacaacaagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcatttta 23775242  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 43467536 - 43467607
Alignment:
Q  132 gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  43467536 gcgtttgtagtccaacggttaggataattgccttccaagcaatagacctgggttcgactcccggcaaacgca 43467607  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 43466644 - 43466710
Alignment:
Q  135 tttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacg 201  Q
    |||||||||||| ||||||||||||||||||| ||||| ||||||| ||||||| | ||| ||||||    
T  43466644 tttgtagtccaatggttaggataattgccttctaagcattagacccaggttcgatttccgacaaacg 43466710  T

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Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 124 - 203
Target Start/End: Original strand, 35485385 - 35485464
Alignment:
Q  124 aacatcaagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 203  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35485385 aacaacaagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 35485464  T

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Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 36100839 - 36100760
Alignment:
Q  124 aacatcaagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 203  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36100839 aacatgaagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 36100760  T

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Target: chr8; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 10739710 - 10739783
Alignment:
Q  130 aagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10739710 aagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 10739783  T

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Target: chr8; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 132 - 203
Target Start/End: Complemental strand, 9819741 - 9819670
Alignment:
Q  132 gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9819741 gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 9819670  T

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Target: chr8; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 129 - 203
Target Start/End: Complemental strand, 36020557 - 36020483
Alignment:
Q  129 caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  36020557 caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacctgggttcgactcctggcaaacgca 36020483  T

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Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 6057586 - 6057516
Alignment:
Q  133 cgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 203  Q
    ||||||||||||||| ||| | ||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  6057586 cgtttgtagtccaacagttggaataattgccttccaagcaatagacctgggttagactcccggcaaacgca 6057516  T

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Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 30514361 - 30514434
Alignment:
Q  130 aagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30514361 aagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 30514434  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 132 - 203
Target Start/End: Complemental strand, 38872650 - 38872579
Alignment:
Q  132 gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38872650 gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 38872579  T

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Target: scaffold0350 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0350
Description:

Target: scaffold0350; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 17011 - 16941
Alignment:
Q  133 cgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 203  Q
    ||||||||||||||| ||| | ||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  17011 cgtttgtagtccaacagttggaataattgccttccaagcaatagacctgggttagactcccggcaaacgca 16941  T

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Target: scaffold0016 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 193
Target Start/End: Complemental strand, 38554 - 38511
Alignment:
Q  150 ttaggataattgccttccaagcaatagacccgggttcgactccc 193  Q
    |||||| |||||||||||||||||||||||||||||| ||||||    
T  38554 ttaggacaattgccttccaagcaatagacccgggttcaactccc 38511  T

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