View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9867_low_17 (Length: 231)
Name: NF9867_low_17
Description: NF9867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9867_low_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 40114234 - 40114377
Alignment:
| Q |
14 |
cataggtaggtttaaagtagaagatgtagtgggcagattattacctgatgaagaacttgagtgcaaggttgcctcttgaggatttgcaacagatgtagag |
113 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40114234 |
cataggtaggtttgaagtagaagatgtagtgggcagattattacctgatgaagaacttgagtgcaaggttgcctcttgaggatttgcaacagatgtagag |
40114333 |
T |
|
| Q |
114 |
gtagtggtggtcgcagtttgtgaagtattagttgtaagtggtgg |
157 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40114334 |
gtagtggtggtcacagtttgtgaagtattagttgtaagtggtgg |
40114377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University