View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9867_low_19 (Length: 227)

Name: NF9867_low_19
Description: NF9867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9867_low_19
NF9867_low_19
[»] chr8 (2 HSPs)
chr8 (14-207)||(3780214-3780407)
chr8 (74-207)||(4076859-4076992)
[»] chr5 (6 HSPs)
chr5 (76-207)||(25955877-25956008)
chr5 (78-205)||(1501287-1501415)
chr5 (76-207)||(42250167-42250298)
chr5 (76-205)||(38280190-38280319)
chr5 (82-207)||(7886406-7886530)
chr5 (78-126)||(38951522-38951570)
[»] chr4 (3 HSPs)
chr4 (76-207)||(52055065-52055196)
chr4 (126-207)||(1158222-1158303)
chr4 (76-176)||(49866732-49866821)
[»] chr7 (12 HSPs)
chr7 (76-207)||(2286509-2286640)
chr7 (76-207)||(7527181-7527312)
chr7 (76-205)||(23844688-23844817)
chr7 (75-205)||(11765760-11765890)
chr7 (78-176)||(40855070-40855168)
chr7 (76-205)||(496736-496865)
chr7 (76-176)||(42535132-42535231)
chr7 (104-207)||(25185878-25185981)
chr7 (115-205)||(48057655-48057745)
chr7 (78-123)||(31427170-31427215)
chr7 (128-176)||(4649281-4649329)
chr7 (142-201)||(31427243-31427302)
[»] chr6 (1 HSPs)
chr6 (76-207)||(33594436-33594567)
[»] chr3 (4 HSPs)
chr3 (86-207)||(47940877-47940998)
chr3 (78-205)||(49786446-49786573)
chr3 (76-176)||(8436813-8436913)
chr3 (109-205)||(8153032-8153128)
[»] chr2 (2 HSPs)
chr2 (74-201)||(11829014-11829141)
chr2 (76-205)||(13922238-13922367)
[»] chr1 (6 HSPs)
chr1 (76-205)||(30339689-30339818)
chr1 (78-205)||(20186760-20186887)
chr1 (75-205)||(51787325-51787454)
chr1 (76-168)||(9672889-9672981)
chr1 (145-207)||(43740393-43740455)
chr1 (76-120)||(43740309-43740352)


Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 3780214 - 3780407
Alignment:
Q  14 ttggtgttgccgggaaaataatggacaaaagttaaaaatggaaagtgcatgatggtgtggtgggaaaatgattggtagaccactcatattttcataccat 113  Q
    |||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  3780214 ttggtgttgccgggaaaataatggacaagagaaaaaaatggaaagtgcatgatggtgtggtgggaaaatgattggtagaccactcatattttcataccac 3780313  T
Q  114 ccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtttctggagtttaggctacatgtcacatgtttgt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  3780314 ccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtttctcgggtttaggctacatgtcacatgtttgt 3780407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 74 - 207
Target Start/End: Original strand, 4076859 - 4076992
Alignment:
Q  74 tgggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtg 173  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||| | || |||||||||||| |||||||||||||| |||||||||||||| ||    
T  4076859 tgggaaaatgattggtagaccactcataatttcataccacccatacacctccacttatttgagaggagagagatggatgaaaaggaagagagacaaattg 4076958  T
Q  174 tttctggagtttaggctacatgtcacatgtttgt 207  Q
    ||| ||| || |||||||||||||||||||||||    
T  4076959 tttgtggggtctaggctacatgtcacatgtttgt 4076992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 76 - 207
Target Start/End: Original strand, 25955877 - 25956008
Alignment:
Q  76 ggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtt 175  Q
    |||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  25955877 ggaaaatgattggtagaccactcataatttcatatcacccatacacccctacatatttgagaggagagagatggatgaaaaggaagagagacaaagtgtt 25955976  T
Q  176 tctggagtttaggctacatgtcacatgtttgt 207  Q
    | ||| || ||||| |||||||||||||||||    
T  25955977 tgtggggtctaggccacatgtcacatgtttgt 25956008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 78 - 205
Target Start/End: Original strand, 1501287 - 1501415
Alignment:
Q  78 aaaatgattggtagaccactcatattttcataccatccatacacccct-acatatttgagaggaaagagatggatgaaagggaagagagacaaagtgttt 176  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||  ||||||||||||||| ||||||||||||||| ||||||||||||||||| |    
T  1501287 aaaatgattggtagaccactcatattttcataccacacatacaccccccacatatttgagaggagagagatggatgaaagagaagagagacaaagtgtat 1501386  T
Q  177 ctggagtttaggctacatgtcacatgttt 205  Q
     ||| || |||||||||||||| ||||||    
T  1501387 atggggtctaggctacatgtcatatgttt 1501415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 76 - 207
Target Start/End: Complemental strand, 42250298 - 42250167
Alignment:
Q  76 ggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtt 175  Q
    |||||||||||||||||||||||||| ||||||| || || | |||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  42250298 ggaaaatgattggtagaccactcataatttcatatcacccgtgcacccccacatatttgagaggagagagatggatgaaaaggaagagagacaaagtgtt 42250199  T
Q  176 tctggagtttaggctacatgtcacatgtttgt 207  Q
    | ||| || || || |||||||||||||||||    
T  42250198 tgtggggtctaagccacatgtcacatgtttgt 42250167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 76 - 205
Target Start/End: Original strand, 38280190 - 38280319
Alignment:
Q  76 ggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtt 175  Q
    ||||||||||||||||||||||||||||| |||||||  |||||||||| |||||||  |||||| ||||||||||||||| ||||||||||||||||||    
T  38280190 ggaaaatgattggtagaccactcatatttccataccactcatacacccccacatattctagaggagagagatggatgaaagagaagagagacaaagtgtt 38280289  T
Q  176 tctggagtttaggctacatgtcacatgttt 205  Q
    | ||| || ||||  || ||||||||||||    
T  38280290 tgtggggtctaggacacgtgtcacatgttt 38280319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 82 - 207
Target Start/End: Complemental strand, 7886530 - 7886406
Alignment:
Q  82 tgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtttctgga 181  Q
    |||||||||||||||| |||||||||||||| ||||||| ||||||||||||||| ||| ||||||  ||||||||||||||||||||| | | | |||     
T  7886530 tgattggtagaccactaatattttcataccacccataca-ccctacatatttgaggggagagagatatatgaaagggaagagagacaaaatatatgtggg 7886432  T
Q  182 gtttaggctacatgtcacatgtttgt 207  Q
     ||||||| |||||||||||||||||    
T  7886431 atttaggccacatgtcacatgtttgt 7886406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 38951570 - 38951522
Alignment:
Q  78 aaaatgattggtagaccactcatattttcataccatccatacaccccta 126  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||    
T  38951570 aaaatgattgatagaccactcatattttcataccacccatacaccccta 38951522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 76 - 207
Target Start/End: Original strand, 52055065 - 52055196
Alignment:
Q  76 ggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtt 175  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||  ||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  52055065 ggaaaatgattggtagaccactcataatttcataacatccatacaccctcacatatttgagaggagagagatggatgaaaaggaagagagacaaagtgtt 52055164  T
Q  176 tctggagtttaggctacatgtcacatgtttgt 207  Q
    | ||| || ||||| |||||||||||||||||    
T  52055165 tgtggggtctaggccacatgtcacatgtttgt 52055196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 126 - 207
Target Start/End: Original strand, 1158222 - 1158303
Alignment:
Q  126 acatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtttctggagtttaggctacatgtcacatgtttgt 207  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||| ||||| | | || ||||| |||||||||||||||||    
T  1158222 acatatttgagaggagagagatgaatgaaagggaagagagacaaaatgtttgtagggtctaggccacatgtcacatgtttgt 1158303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 49866821 - 49866732
Alignment:
Q  76 ggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtt 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||           | |||||||| |||||| |||||||| ||||||||||||||||||    
T  49866821 ggaaaatgattggtagaccactcatattttcataccatccatac-----------tatgagaggagagagatcgatgaaagagaagagagacaaagtgtt 49866733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 76 - 207
Target Start/End: Complemental strand, 2286640 - 2286509
Alignment:
Q  76 ggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtt 175  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||  | ||||||||||||| |||||||||||||| |||||||||||||||||||    
T  2286640 ggaaaatgattggtagaccactcataatttcataccacccatacaccctcatatatttgagaggagagagatggatgaaaaggaagagagacaaagtgtt 2286541  T
Q  176 tctggagtttaggctacatgtcacatgtttgt 207  Q
    | ||| || ||||| |||||||||||||||||    
T  2286540 tgtggggtctaggccacatgtcacatgtttgt 2286509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 76 - 207
Target Start/End: Original strand, 7527181 - 7527312
Alignment:
Q  76 ggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtt 175  Q
    |||||||||||||||||||||||||| |||| ||||| ||||||| ||| | ||||||||||||| ||||||||||||||   || ||||||||||||||    
T  7527181 ggaaaatgattggtagaccactcataatttcgtaccacccatacagccccatatatttgagaggagagagatggatgaaaaaaaaaagagacaaagtgtt 7527280  T
Q  176 tctggagtttaggctacatgtcacatgtttgt 207  Q
    | |||||| ||||| |||||||||||||||||    
T  7527281 tatggagtctaggccacatgtcacatgtttgt 7527312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 76 - 205
Target Start/End: Complemental strand, 23844817 - 23844688
Alignment:
Q  76 ggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtt 175  Q
    |||||||||||| || ||||||||||||||||||||| | ||||||||| | ||||||||||||| |||||||||||||| |||||||||||||||||||    
T  23844817 ggaaaatgattgataaaccactcatattttcataccacctatacacccccatatatttgagaggagagagatggatgaaaaggaagagagacaaagtgtt 23844718  T
Q  176 tctggagtttaggctacatgtcacatgttt 205  Q
    | ||  || ||||  |||||||||||||||    
T  23844717 tgtgaggtctagggcacatgtcacatgttt 23844688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 75 - 205
Target Start/End: Complemental strand, 11765890 - 11765760
Alignment:
Q  75 gggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgt 174  Q
    |||||||||||||||||||||||||||||| |||||||  |||||||||| |||||||  |||||| ||||||||||||||| |||||||||||||||||    
T  11765890 gggaaaatgattggtagaccactcatatttccataccactcatacacccccacatattctagaggagagagatggatgaaagagaagagagacaaagtgt 11765791  T
Q  175 ttctggagtttaggctacatgtcacatgttt 205  Q
    || ||| ||  |||  || ||||||||||||    
T  11765790 ttgtggggtcaaggacacgtgtcacatgttt 11765760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 78 - 176
Target Start/End: Original strand, 40855070 - 40855168
Alignment:
Q  78 aaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgttt 176  Q
    |||||||||| ||||||||| |||||||||||||| ||||||||||| ||||||||||||||| ||||||| ||||||||||| |||||||||||||||    
T  40855070 aaaatgattgttagaccacttatattttcataccacccatacacccccacatatttgagaggagagagatgaatgaaagggaaaagagacaaagtgttt 40855168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 76 - 205
Target Start/End: Complemental strand, 496865 - 496736
Alignment:
Q  76 ggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtt 175  Q
    ||||||||||||||||||||||||||||| |||||||  |||||||||| |||||||  |||||| ||||||||||||||| ||||||||||||||||||    
T  496865 ggaaaatgattggtagaccactcatatttccataccactcatacacccccacatattctagaggagagagatggatgaaagagaagagagacaaagtgtt 496766  T
Q  176 tctggagtttaggctacatgtcacatgttt 205  Q
    | ||| || ||||  || ||||| ||||||    
T  496765 tgtggggtctaggacacgtgtcatatgttt 496736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 76 - 176
Target Start/End: Original strand, 42535132 - 42535231
Alignment:
Q  76 ggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtt 175  Q
    ||||||||||||||||||||||||||||| |||||||  |||||||||| |||||||  |||||| ||||||||||||||| ||||||||||||||||||    
T  42535132 ggaaaatgattggtagaccactcatatttccataccactcatacacccc-acatattctagaggagagagatggatgaaagagaagagagacaaagtgtt 42535230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 104 - 207
Target Start/End: Original strand, 25185878 - 25185981
Alignment:
Q  104 ttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtttctggagtttaggctacatgtcacatgt 203  Q
    |||||||||| |||| ||||| ||||||||| ||||| |||||||||||||| |||||||||| ||||| ||| ||| || ||||| |||||||||||||    
T  25185878 ttcataccattcatatacccccacatatttgtgaggagagagatggatgaaaaggaagagagataaagtatttgtggggtctaggccacatgtcacatgt 25185977  T
Q  204 ttgt 207  Q
    ||||    
T  25185978 ttgt 25185981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 115 - 205
Target Start/End: Original strand, 48057655 - 48057745
Alignment:
Q  115 catacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtttctggagtttaggctacatgtcacatgttt 205  Q
    |||||||||| |||||||| |||||| ||||||||||||||| ||||||||||||||||||| ||| || ||||  || ||||||||||||    
T  48057655 catacacccccacatattttagaggagagagatggatgaaagagaagagagacaaagtgtttgtggggtctaggacacgtgtcacatgttt 48057745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 31427170 - 31427215
Alignment:
Q  78 aaaatgattggtagaccactcatattttcataccatccatacaccc 123  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||    
T  31427170 aaaatgattggtagaccactcatattttcataccacccaaacaccc 31427215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 4649281 - 4649329
Alignment:
Q  128 atatttgagaggaaagagatggatgaaagggaagagagacaaagtgttt 176  Q
    ||||||||||||| |||||||||||||| |||||||||| |||||||||    
T  4649281 atatttgagaggagagagatggatgaaaaggaagagagataaagtgttt 4649329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 31427243 - 31427302
Alignment:
Q  142 agagatggatgaaagggaagagagacaaagtgtttctggagtttaggctacatgtcacat 201  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||  | |||||||||||    
T  31427243 agagatggatgagagggaagagagacaaagtgtttgtggagtctaaaccacatgtcacat 31427302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 76 - 207
Target Start/End: Original strand, 33594436 - 33594567
Alignment:
Q  76 ggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtt 175  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||| | ||||||||||||| |||||||||||||| |||||||||||||||| ||    
T  33594436 ggaaaatgattggtagaccactcataatttcataccacccatacacccccatatatttgagaggagagagatggatgaaaaggaagagagacaaagtatt 33594535  T
Q  176 tctggagtttaggctacatgtcacatgtttgt 207  Q
    | ||| || ||||| |||||||||||||||||    
T  33594536 tgtggggtctaggccacatgtcacatgtttgt 33594567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 86 - 207
Target Start/End: Complemental strand, 47940998 - 47940877
Alignment:
Q  86 tggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtttctggagttt 185  Q
    |||||||||||||||| |||||||||| ||||||||||| | ||||||||||||| |||||||||||||| |||||||||||||||||||| ||| || |    
T  47940998 tggtagaccactcataatttcataccacccatacacccccatatatttgagaggagagagatggatgaaaaggaagagagacaaagtgtttgtggggtct 47940899  T
Q  186 aggctacatgtcacatgtttgt 207  Q
    |||| |||||||||||||||||    
T  47940898 aggccacatgtcacatgtttgt 47940877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 78 - 205
Target Start/End: Complemental strand, 49786573 - 49786446
Alignment:
Q  78 aaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtttc 177  Q
    |||||||||||||||||||||||||||||||||||  |||||||||| |||||||| |||||| ||||||| ||||||| |||||||||||||||||||     
T  49786573 aaaatgattggtagaccactcatattttcataccactcatacacccccacatattttagaggagagagatgaatgaaagagaagagagacaaagtgtttg 49786474  T
Q  178 tggagtttaggctacatgtcacatgttt 205  Q
    ||| || ||||  || ||||||||||||    
T  49786473 tggggtctaggacacgtgtcacatgttt 49786446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 76 - 176
Target Start/End: Original strand, 8436813 - 8436913
Alignment:
Q  76 ggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtt 175  Q
    ||||||||||||||||||||||||||||| |||||||  |||||||||| |||||||  |||||| ||||||||||||||| ||||||||||||||||||    
T  8436813 ggaaaatgattggtagaccactcatatttccataccactcatacacccccacatattctagaggagagagatggatgaaagagaagagagacaaagtgtt 8436912  T
Q  176 t 176  Q
    |    
T  8436913 t 8436913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 109 - 205
Target Start/End: Complemental strand, 8153128 - 8153032
Alignment:
Q  109 accatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtttctggagtttaggctacatgtcacatgttt 205  Q
    |||| ||||||||| | ||||||||||||||| |||||||||| |||| ||||||||||||||||||| |||||| ||||| |||||||||||||||    
T  8153128 accacccatacacctccacatatttgagaggagagagatggataaaagagaagagagacaaagtgtttgtggagtctaggccacatgtcacatgttt 8153032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 74 - 201
Target Start/End: Complemental strand, 11829141 - 11829014
Alignment:
Q  74 tgggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtg 173  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||| | |||||| |||||||    
T  11829141 tgggaaaatgattggtagaccacttatattttcataccacccatacacccccacatatttgagaggagagagatggatgaaagaggagagaggcaaagtg 11829042  T
Q  174 tttctggagtttaggctacatgtcacat 201  Q
    ||| ||| || ||||  |||||||||||    
T  11829041 tttgtggggtctaggacacatgtcacat 11829014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 76 - 205
Target Start/End: Complemental strand, 13922367 - 13922238
Alignment:
Q  76 ggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtt 175  Q
    ||||||||||||||||||||||||||||| |||||||  |||||||||| |||||||  |||||| ||||||||||||||| ||||||||||||||||||    
T  13922367 ggaaaatgattggtagaccactcatatttccataccactcatacacccccacatattctagaggagagagatggatgaaagagaagagagacaaagtgtt 13922268  T
Q  176 tctggagtttaggctacatgtcacatgttt 205  Q
    | ||| || ||||  || ||||||||||||    
T  13922267 tgtggggtctaggacacgtgtcacatgttt 13922238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 76 - 205
Target Start/End: Complemental strand, 30339818 - 30339689
Alignment:
Q  76 ggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtt 175  Q
    |||||||||||||||||||||||||||||| ||||||  |||||||||  |||||||  |||||| ||||||||||||||| ||||||||||||||||||    
T  30339818 ggaaaatgattggtagaccactcatatttttataccactcatacaccctcacatattctagaggagagagatggatgaaagagaagagagacaaagtgtt 30339719  T
Q  176 tctggagtttaggctacatgtcacatgttt 205  Q
    | ||| || ||||  || ||||||||||||    
T  30339718 tgtggggtctaggacacgtgtcacatgttt 30339689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 78 - 205
Target Start/End: Original strand, 20186760 - 20186887
Alignment:
Q  78 aaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtttc 177  Q
    ||||||||||||||||||||||||||| |||||||  |||||||||| |||||||| |||||  ||||||||||||||| |||||||||||||||||||     
T  20186760 aaaatgattggtagaccactcatatttccataccactcatacacccccacatattttagaggggagagatggatgaaagagaagagagacaaagtgtttg 20186859  T
Q  178 tggagtttaggctacatgtcacatgttt 205  Q
    |||  | ||||  || ||||||||||||    
T  20186860 tgggatctaggacacgtgtcacatgttt 20186887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 205
Target Start/End: Complemental strand, 51787454 - 51787325
Alignment:
Q  75 gggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgt 174  Q
    |||||||||||||||||||||||||||||| |||||||  |||||||||| |||||||  |||||| ||||||| ||||||| |||||||||||||||||    
T  51787454 gggaaaatgattggtagaccactcatatttccataccactcatacacccc-acatattctagaggagagagatgcatgaaagagaagagagacaaagtgt 51787356  T
Q  175 ttctggagtttaggctacatgtcacatgttt 205  Q
    || ||| || |||   || ||||||||||||    
T  51787355 ttgtggggtctagagcacgtgtcacatgttt 51787325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 76 - 168
Target Start/End: Original strand, 9672889 - 9672981
Alignment:
Q  76 ggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagaca 168  Q
    ||||||||||||||||||||||||||||| |||||||  |||||||||| |||||||  |||||| ||||||||||||||| |||||||||||    
T  9672889 ggaaaatgattggtagaccactcatatttccataccactcatacacccccacatattctagaggagagagatggatgaaagagaagagagaca 9672981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 207
Target Start/End: Original strand, 43740393 - 43740455
Alignment:
Q  145 gatggatgaaagggaagagagacaaagtgtttctggagtttaggctacatgtcacatgtttgt 207  Q
    ||||||||| | |||||||||||||||||||| ||  |||||||| |||| ||||||||||||    
T  43740393 gatggatgataaggaagagagacaaagtgtttgtgaggtttaggccacatatcacatgtttgt 43740455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 43740309 - 43740352
Alignment:
Q  76 ggaaaatgattggtagaccactcatattttcataccatccataca 120  Q
    |||||||||||||||||| ||| |||||||||||||| |||||||    
T  43740309 ggaaaatgattggtagactact-atattttcataccacccataca 43740352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University