View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9867_low_2 (Length: 436)
Name: NF9867_low_2
Description: NF9867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9867_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 5647081 - 5646660
Alignment:
| Q |
1 |
ctacaatcattctaaagcccattggttttccttacgaatctcctcctcttcctccggagagaaatcattcgcaatcttaaaagcctggcgaatctgctcc |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5647081 |
ctacaatcattctaaagcccattgattttccttacgaatctcctcctcttcctccggagagaaatcattcgcaatcttaaaagcctggcgaatctgctcc |
5646982 |
T |
|
| Q |
101 |
gatgtcttaccatgcataatctcgcctacagtcttgcaagtaagctccagcaaactcttaatatccaaataattcgcagcccgaacgagttcaaacaacg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5646981 |
gatgtcttaccatgcataatctcgcctacagtcttgcaagtaagctccagcaaactcttaatatccaaataattcgcagcccgaacgagttcaaacaacg |
5646882 |
T |
|
| Q |
201 |
tagtattatcaaccttaacaaactcagcatcccacttatccagctcatcctccttactcactactttctcttcagaactcacagcagcagcagccttaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5646881 |
tagtattatcaaccttaacaaactcagcatcccacttatccagctcatcctccttactcactactttctcttcagaactcacagcagcagcagccttaga |
5646782 |
T |
|
| Q |
301 |
aacatcttcaccggatttcttttcatcggtcctcgaaacctttttacgatacacaagaccatcagtcttccaaggcttttctt---cttcagcaaacgca |
397 |
Q |
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||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5646781 |
aacatcttcaccggatttcttttcatcagtgctcgaaacctttttacgatacacaagaccatcagtcttccaaggcttttcttcttcttcagcaaacgca |
5646682 |
T |
|
| Q |
398 |
gcagcttcaacatgtttcttgc |
419 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
5646681 |
gcagcttcaacatgtttcttgc |
5646660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 181
Target Start/End: Complemental strand, 8992681 - 8992505
Alignment:
| Q |
5 |
aatcattctaaagcccattggttttccttacgaatctcctcctcttcctccggagagaaatcattcgcaatcttaaaagcctggcgaatctgctccgatg |
104 |
Q |
| |
|
|||||||| || ||||||||||||||| |||||| |||||||||||||| || |||||||||||| ||| ||||| | || |||||||| ||| | || |
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| T |
8992681 |
aatcattcaaatgcccattggttttccctacgaacttcctcctcttcctctggtgagaaatcattcttaatgttaaaggtcttgcgaatctcctcaggtg |
8992582 |
T |
|
| Q |
105 |
tcttaccatgcataatctcgcctacagtcttgcaagtaagctccagcaaactcttaatatccaaataattcgcagcc |
181 |
Q |
| |
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| T |
8992581 |
tcttccccttgatcatgtctgccacagtctggcatgtaagatccagcaggttcttgatattcaaataattagcagcc |
8992505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 8983282 - 8983218
Alignment:
| Q |
6 |
atcattctaaagcccattggttttccttacgaatctcctcctcttcctccggagagaaatcattc |
70 |
Q |
| |
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||||||| || ||||||||||||||| |||||| |||||||||||||| || ||||| |||||| |
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| T |
8983282 |
atcattcaaatgcccattggttttccctacgaacttcctcctcttcctcaggtgagaagtcattc |
8983218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 37365257 - 37365194
Alignment:
| Q |
7 |
tcattctaaagcccattggttttccttacgaatctcctcctcttcctccggagagaaatcattc |
70 |
Q |
| |
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|||||| || ||||||||||||||| |||||| || |||| ||||||||||| |||||||||| |
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| T |
37365257 |
tcattcaaatgcccattggttttccctacgaacttcttccttttcctccggagtgaaatcattc |
37365194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 37362807 - 37362859
Alignment:
| Q |
18 |
cccattggttttccttacgaatctcctcctcttcctccggagagaaatcattc |
70 |
Q |
| |
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||||||| |||||| |||||| || |||||||||||||||| |||||||||| |
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|
| T |
37362807 |
cccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattc |
37362859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 6778825 - 6778762
Alignment:
| Q |
7 |
tcattctaaagcccattggttttccttacgaatctcctcctcttcctccggagagaaatcattc |
70 |
Q |
| |
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|||||| || |||||||| |||||| |||||| || |||||||||||||||| |||||||||| |
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| T |
6778825 |
tcattcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattc |
6778762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 37480615 - 37480678
Alignment:
| Q |
7 |
tcattctaaagcccattggttttccttacgaatctcctcctcttcctccggagagaaatcattc |
70 |
Q |
| |
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|||||| || |||||||| |||||| ||||||| || ||||||||||||| || |||||||||| |
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| T |
37480615 |
tcattcaaatgcccattgattttccctacgaatttcttcctcttcctccgaagtgaaatcattc |
37480678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 6774528 - 6774475
Alignment:
| Q |
17 |
gcccattggttttccttacgaatctcctcctcttcctccggagagaaatcattc |
70 |
Q |
| |
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|||||||| |||||| |||||| || |||||||||||||||| |||||||||| |
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| T |
6774528 |
gcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattc |
6774475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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