View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9867_low_20 (Length: 204)
Name: NF9867_low_20
Description: NF9867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9867_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 29522203 - 29522388
Alignment:
| Q |
1 |
ataatcatacgtgagttttactatattgtaaaaaacatgtttaaataatttgaattttactttattgtaaaccatatgattgagtgggacgagaaataat |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||||||||||| |
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| T |
29522203 |
ataagcatacgtgagttttactatattgtaaaaaacatgtttaaataatttgagttttactttattgtaaaaaatacgatggagtgggacgagaaataat |
29522302 |
T |
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| Q |
101 |
ttgatacatagtctatatcatatcatattactataatacatagatccaagagaaattcttgcatagtctcttcctctcgatgaatctc |
188 |
Q |
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| T |
29522303 |
ttgatacatagtgtatatcatatcatattactataatacatag--ccatgagaaattcttgcatggtctctcactctcgatgaatctc |
29522388 |
T |
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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 2683473 - 2683584
Alignment:
| Q |
3 |
aatcatacgtgagttttactatattgtaaaaaacatgtttaaataatttgaattttactttattgtaaaccatatgattga---gtgggacgagaaataa |
99 |
Q |
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|||||||||||||||| | ||||| |||| |||||||||||||||||||| |||| ||||||| | || ||| ||||| |||||| |||||||| |
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| T |
2683473 |
aatcatacgtgagtttgattatatcgtaagtaacatgtttaaataatttgagttttcctttattatgaaaaataaaattgattggtgggataagaaataa |
2683572 |
T |
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| Q |
100 |
tttgatacatag |
111 |
Q |
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|||||||||||| |
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| T |
2683573 |
tttgatacatag |
2683584 |
T |
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