View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9867_low_3 (Length: 417)
Name: NF9867_low_3
Description: NF9867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9867_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 6 - 400
Target Start/End: Complemental strand, 16458766 - 16458372
Alignment:
| Q |
6 |
gtttggtgttgcttcaagcaagagttcgtggacaaagagaaaggagtatgtgaaactatggtggaaaaacaacaatgcaatgaagggttgtgtgtttttg |
105 |
Q |
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| T |
16458766 |
gtttggtattgcttcaagcaagagttcatggacaaagagaaaggagtatgtgaaactatggtggaaaaacaacaatgcaatgaagggttgtgtgtttttg |
16458667 |
T |
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| Q |
106 |
gatagtttaccacaaaatgaagatgacccttcttctcttcctcctctatgtgtctccgaagacacttcgcggtttcgatatacttgcaaaggtggacttc |
205 |
Q |
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| T |
16458666 |
gatagtttaccacaaaatgaagatgacccttcttctcttcctcctctatgtgtctccgaagacacttcgcggtttcaatatacttgcaaaggtggacttc |
16458567 |
T |
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| Q |
206 |
gatcagctatccgggtggcacgtgttgtcgcggagactgtagccttgaatcattcaaatgtgaagtggtatgtgtttggagacgacgacacggttttctt |
305 |
Q |
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| T |
16458566 |
gatcagctatccgggtggcacgtgttgtcgcggagactgtagccttgaatcattcaaatgtaaagtggtatgtgtttggagacgacgacacggttttctt |
16458467 |
T |
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| Q |
306 |
cccggagaatttggtgaagactctttctaaatatgatcatgagctttggtattatattggtgcacactctgagatttatgagcagaatcgtttgt |
400 |
Q |
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| T |
16458466 |
cccggagaatttggtgaagactctttctaaatatgatcatgagctttggtattatattggtgcacactctgagatttatgagcagaatcgtttgt |
16458372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 345
Target Start/End: Complemental strand, 37515221 - 37515126
Alignment:
| Q |
250 |
ttgaatcattcaaatgtgaagtggtatgtgtttggagacgacgacacggttttcttcccggagaatttggtgaagactctttctaaatatgatcat |
345 |
Q |
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||||||||||| |||| | ||||||||||||||| || || ||||| ||||||| || |||||| | || ||||| |||||||||||||||||| |
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| T |
37515221 |
ttgaatcattctgatgttaggtggtatgtgtttggtgatgatgacacaattttctttcctgagaatcttgttaagacactttctaaatatgatcat |
37515126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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