View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9867_low_4 (Length: 411)
Name: NF9867_low_4
Description: NF9867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9867_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 38 - 393
Target Start/End: Complemental strand, 47629371 - 47629023
Alignment:
| Q |
38 |
taatttaattgtactaatttgtacgtaattatgtatgttttgagggaaggacaatgtgttttaccgggaaaagaaaaacggatatatccacaacagaaga |
137 |
Q |
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| T |
47629371 |
taatttaattgtactaatttgta----attatgtatgttttgagggaaggacaatgtgttttaccgggaaaagaaaaacggatatatccacaacagaa-- |
47629278 |
T |
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| Q |
138 |
acaactaagcttgacttgaatgaaaaaatctccaaaaccaaaaccatgtttggtctgaatatgatgaaaacatggaaattgttaccctccacagctccat |
237 |
Q |
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| T |
47629277 |
-caactaagcttgacttgaatgaaaaaatctccaaaaccaaaacaatgtttggtctgaatatgatgaaaacatggaaattgttaccctccacagttccat |
47629179 |
T |
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| Q |
238 |
acttaatcaaccgtccatcttcctcaaccgccgttgccacggtgaaaatggaaaaaccaccatcttccaattccaaaccccgcagaagatcctcttacgg |
337 |
Q |
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| T |
47629178 |
acttaatcaaccgtccatcttcctcaaccgccgttgccacggtgaaaatggaaaaaccaccatcctccaattccaaaccccgcagaagatcctcttacgg |
47629079 |
T |
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| Q |
338 |
aacttctcgtaaatcaattctcnnnnnnnccttcaaacaagaacaagtcactttca |
393 |
Q |
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| T |
47629078 |
aacttctcgtaaatcaattctcaaaaaaaccttcaaacaagaacaagtcactttca |
47629023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 47629457 - 47629427
Alignment:
| Q |
1 |
acaactgttagaaagagtgaagttgaagtaa |
31 |
Q |
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| T |
47629457 |
acaactgttagaaagagtgaagttgaagtaa |
47629427 |
T |
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