View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9867_low_5 (Length: 398)
Name: NF9867_low_5
Description: NF9867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9867_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 167 - 385
Target Start/End: Complemental strand, 31491053 - 31490834
Alignment:
| Q |
167 |
ttaggttgaaattagttgaacctaactagtcgaaccgaactttttgcgaaggaaaatgatatatatcgcaacgacagctaacaagcatttgca-taggtc |
265 |
Q |
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| T |
31491053 |
ttaggttgaaattaattgaacctaactagtcgaaccgaactttttgcgaaggaaaatgatatatatcgtgacgacacctaacaagcatttgcagtaggtc |
31490954 |
T |
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| Q |
266 |
ccttttacttccatcaagccatgcattcagtcaaacaaccaataaaccaatggttgtatttcatccgtggtctgtttgctatgtttttcttcgctatata |
365 |
Q |
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| T |
31490953 |
ccttttacttccatcaatccatgcattcagtcaaacaaccaataaaccaatggttgtatttcattcgtggtctgctcactatgtttttcttcgctatata |
31490854 |
T |
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| Q |
366 |
taacattggtcttttgtgaa |
385 |
Q |
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| T |
31490853 |
tagcattggtcttttgtgaa |
31490834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 31491232 - 31491082
Alignment:
| Q |
18 |
caaggtagtggtggagacccagtttcactacaatgaatttatgtgttgtccctctatcaacttatttgtttaaattgtttgtttttaagtattgggccat |
117 |
Q |
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| T |
31491232 |
caaggtagtggtggagacccagtttcactacaatgaatttatgtgttgtccctctatcaacttatttgtttaaattgtttgtttttaagtattgggccat |
31491133 |
T |
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| Q |
118 |
agtgttgatcaaaatgttgatatgggcaattgagtctctagtaaacttttt |
168 |
Q |
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| T |
31491132 |
agtgttgatcaaaatgttgatatgggcaattgagtctctagtaaacttttt |
31491082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 50445857 - 50445730
Alignment:
| Q |
18 |
caaggtagtggtggagacccagtttcactacaatgaatttatgtgttgtccctctatcaacttatttgtttaaattgtttgttttt-------aagtatt |
110 |
Q |
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| T |
50445857 |
caaggtagtggtagagacccaatttcactacagtgaattt-tgtgtt-tccctctatcaatttatttgtttaaattgtgtttttttatttttgaagtatt |
50445760 |
T |
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| Q |
111 |
gggccatagtgttgatcaaaatgttgatat |
140 |
Q |
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| T |
50445759 |
gggccatattgttgctcaaaatgttgatat |
50445730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 7841113 - 7840984
Alignment:
| Q |
18 |
caaggtagtggtggagacccagtttcactacaatgaatttatgtgttgtccctctatcaacttatttgtttaaattg----tttgttttt-------aag |
106 |
Q |
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| T |
7841113 |
caaggtagtggtagagacccaatttcactacggtaaattt-tgtgtt-tccctctatcaatttatttgtttaaattgtgtttttgtttttatttttgaag |
7841016 |
T |
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| Q |
107 |
tattgggccatagtgttgatcaaaatgttgat |
138 |
Q |
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| T |
7841015 |
tattgggccatattgttgctcaaaatgttgat |
7840984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 27077308 - 27077383
Alignment:
| Q |
18 |
caaggtagtggtggagacccagtttcactacaatgaatttatgtgttgtccctctatcaacttatttgtttaaattgt |
95 |
Q |
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| T |
27077308 |
caaggtagtggtagagacccaatttcactatggtgaattt-tgtgtt-tccctctatcaatttatttgtttaaattgt |
27077383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 289 - 379
Target Start/End: Original strand, 52544929 - 52545018
Alignment:
| Q |
289 |
cattcagtcaaacaaccaataaaccaatggttgtatttcatccgtggtctgtttgctatgtttttcttcgctatatataacattggtcttt |
379 |
Q |
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| T |
52544929 |
cattcagtcaaatagccaataattcaatggttgtatttcattcgtggtgtg-tcgcaatgtttttcttcgctgtatatagcattgttcttt |
52545018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 51994445 - 51994370
Alignment:
| Q |
18 |
caaggtagtggtggagacccagtttcactacaatgaatttatgtgttgtccctctatcaacttatttgtttaaattgt |
95 |
Q |
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| T |
51994445 |
caaggtagtggtagagacccaatttcactacggcgaattt-tgtgtt-tccctctattaatttatttgtttaaattgt |
51994370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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