View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9867_low_6 (Length: 397)
Name: NF9867_low_6
Description: NF9867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9867_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 70 - 380
Target Start/End: Complemental strand, 3426679 - 3426369
Alignment:
| Q |
70 |
tgagtccaacaatgtaaagtcggtttcacttttgagtttactaaaattcgaattaacaactaagtcaaatcgaaattgatacctgaattgtattgaatct |
169 |
Q |
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| T |
3426679 |
tgagtccaacaatgtaaagtcggtttcacttttgagtttactaaaattcgaattaacaactaagtcatattgaaagcgatacctaaattgtattgaatct |
3426580 |
T |
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| Q |
170 |
ttaacctgtacaatttgctcatgttatgcttattcttttgctcattattcatttacaacaacaatgtctttcttttgttctatgaagatgatcttctttt |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3426579 |
ttaacctgtacaatttgctcatgttatgcttattcttttgctcattattcatttacaacaacaatgtctttcttttgttctatgaagatgatcttctttt |
3426480 |
T |
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| Q |
270 |
gacatgtattcaaagtgaattcttaaagcagtaaatggaacaactctcaaataggttctcacttaaatatcttggctatcctcattaattcctgagaatt |
369 |
Q |
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| T |
3426479 |
gacatgtattcaaagtgaattcttaaagcagtaaatggaacaactgtcaaataggttctcacttaaatatcttggccatcctcattaattcctgagaatt |
3426380 |
T |
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| Q |
370 |
gaactcattcc |
380 |
Q |
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| T |
3426379 |
gaactcattcc |
3426369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 74
Target Start/End: Complemental strand, 3426716 - 3426686
Alignment:
| Q |
44 |
tttcctacaagtttattttagtttactgagt |
74 |
Q |
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| T |
3426716 |
tttcctacaagtttattttagtttactgagt |
3426686 |
T |
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