View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9867_low_7 (Length: 370)
Name: NF9867_low_7
Description: NF9867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9867_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 39525806 - 39526143
Alignment:
| Q |
1 |
tggcctaggtgcatatttccattttggttgccaagccagtaattgcgtcaagtgaacagactcgtgacttgttgtgaatagcactgtttagcacgaacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39525806 |
tggcctaggtgcatatttccattttggttgccaagccaataattgtgtcaagtgaacagactcgtgacttgttgtgaatagcactgtttagcacgaacaa |
39525905 |
T |
|
| Q |
101 |
cctccaccttgctgctctgtcctggatgaatacgcggtagattttaaatttacatcaaccatgtcatcttgctttgttgaaagagattccatcccgggca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39525906 |
cctccaccttgctgctctgtcctggatgaatacgcggtagattttaaatttacatcaaccatgtcatcttgctttgttgaaagagattccatcccgggca |
39526005 |
T |
|
| Q |
201 |
aggctgaagcaatcttgcgaaataaaggctgcaacattttaatcactcgagttaatatgaacacgataaagtgacggcgagagcaaaacatatagaatga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39526006 |
aggctgaagcaatcttgcgaaataaaggctgcaacattttaatcactcgagttaatatgaacacgataaagtgacggcgagagcaaaacatatagaatga |
39526105 |
T |
|
| Q |
301 |
gacaaacatgtaaaaaagaaagacagttgaccacaagt |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39526106 |
gacaaacatgtaaaaaagaaagacagttgaccacaagt |
39526143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 232
Target Start/End: Original strand, 37852069 - 37852206
Alignment:
| Q |
98 |
caacctccaccttgctgctctgtcctggatgaatacgcggtagattttaaatttacatcaaccatgtcatcttgctttgttgaa---agagattccatcc |
194 |
Q |
| |
|
|||||||| || ||||||||||| ||||||||| | | || | |||||||||||| ||||||||||| || | ||||| ||| || | |||||||| |
|
|
| T |
37852069 |
caacctcctccctgctgctctgtattggatgaatgcactgtgggttttaaatttacgtcaaccatgtcttccttatttgtagaagaaagggtttccatcc |
37852168 |
T |
|
| Q |
195 |
cgggcaaggctgaagcaatcttgcgaaataaaggctgc |
232 |
Q |
| |
|
| |||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
37852169 |
ctggcaaggcggaagcaatcttacgaaacaaaggctgc |
37852206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University