View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9867_low_8 (Length: 316)
Name: NF9867_low_8
Description: NF9867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9867_low_8 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 74 - 316
Target Start/End: Original strand, 24621223 - 24621461
Alignment:
| Q |
74 |
gtaatctacattcaacaaa-gcatggttgttttgcaccattctagcttatttccatatatcttacacagggagagtgtgactccttgttgttctgcaggt |
172 |
Q |
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| T |
24621223 |
gtaatctacattcaacaaaagcatggttgttttgcaccattctagcttatttccatatatcttacacaaggagagtgtgactccttgttgttctgcaggt |
24621322 |
T |
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| Q |
173 |
tacaataccatatcatatcatcattaggaatgcaacgaaaccagaccaaaccaaaccaaccattgtcttaggataacatcaatgcttcaccaaacaaaga |
272 |
Q |
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| T |
24621323 |
tacaataccata-----tcatcattaggaatgcaacgaaaccagaccaaaccaaaccaaccattgtcttaggataacatcaatgcttcaccaaacaaaga |
24621417 |
T |
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| Q |
273 |
ctgtccactttaaatagtttgtcgttgttcaatcatatttatgt |
316 |
Q |
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| T |
24621418 |
ctgtccactttaaatagtttgttgttgttcaatcatatttatgt |
24621461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 74 - 314
Target Start/End: Complemental strand, 47569747 - 47569519
Alignment:
| Q |
74 |
gtaatctacattcaacaaa-gcatggttgttttgcaccattctagcttatttccatatatcttacacagggagagtgtga--ctccttgttgttctgcag |
170 |
Q |
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| T |
47569747 |
gtaatctacattccacaaaagcatggttcttttgcaccaccctagcttattttcatatatcttacacacaaagagtgtgagcctccttattgctacgaaa |
47569648 |
T |
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| Q |
171 |
gttacaataccatatcatatcatcattaggaatgcaacgaaaccagaccaaaccaaaccaaccattgtcttaggataacatcaatgcttcaccaaacaaa |
270 |
Q |
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| T |
47569647 |
gtgaaaataccatatcat-----catcaggaacacaacgcaagca-----aaccaaaccaaccattgtctttggataacgtcaatgcttcaccaaacaa- |
47569559 |
T |
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| Q |
271 |
gactgtccactttaaatagtttgtcgttgttcaatcatatttat |
314 |
Q |
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| T |
47569558 |
----gcccactttaaatagtttgttgttgttcaatcatatttat |
47569519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 8332023 - 8331955
Alignment:
| Q |
95 |
atggttgttttgcaccattctagcttatttccatatatcttacacagggagagtgtgactccttgttgttct |
166 |
Q |
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| T |
8332023 |
atggttcttttgcaccatcctagcttattttcatatatcttacata---agagtgtgcctccttattgttct |
8331955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 74 - 140
Target Start/End: Complemental strand, 16375802 - 16375735
Alignment:
| Q |
74 |
gtaatctacattcaacaaa-gcatggttgttttgcaccattctagcttatttccatatatcttacaca |
140 |
Q |
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| T |
16375802 |
gtaatctacataccacaaaagcatggttcttttgtaccatcctaacgtatttccatatatcttacaca |
16375735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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