View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9867_low_9 (Length: 306)
Name: NF9867_low_9
Description: NF9867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9867_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 211
Target Start/End: Original strand, 39903252 - 39903449
Alignment:
| Q |
14 |
agaccacttaccgtagcaaatccaaaaagaaaatattgaccagatagcaaatccaaatctattgtccgaaaattaattacatttgaccttggagtgctat |
113 |
Q |
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| T |
39903252 |
agaccacttaccgtagcaaatccaaaaagaaaatattgaccagatagcaaatccaaatctattgtccgacaattaattacatttgaccttggagtgctat |
39903351 |
T |
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| Q |
114 |
acattaattagccatgacaaagtggctttatactataggagtgaagtttaacataacatgttgtatacgagctggaaaccgttagtgtactttaattc |
211 |
Q |
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| T |
39903352 |
acattaattagccatgacaatgtggctttatactataggagtgaagtttaacataacatgttgtatacgagctggaaaccgttagtgtactttaattc |
39903449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 291
Target Start/End: Original strand, 39903471 - 39903514
Alignment:
| Q |
248 |
cacgtcaatgtcattggacattagcctagtagaaatgtacctaa |
291 |
Q |
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| T |
39903471 |
cacgtcaatgtgattggacattagcctagtagaaatgtacctaa |
39903514 |
T |
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