View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9868_high_16 (Length: 242)
Name: NF9868_high_16
Description: NF9868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9868_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 140 - 237
Target Start/End: Complemental strand, 4611198 - 4611100
Alignment:
| Q |
140 |
caaattgttgttctagtgtcagacatttcaactatttagaagtaa-tttgaaactgttcccaatctgcaatttgatgtcccaaagattcccaatctttt |
237 |
Q |
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| T |
4611198 |
caaactgttgttctagtgtcagacatttcaactatttagaagtaaatttgaaactattaccaatctgcaatttgatgtcccaaagattcccaatctttt |
4611100 |
T |
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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 4611501 - 4611449
Alignment:
| Q |
24 |
tctgtccgtattcgtgtttcatagacccaaaccaaacgttttggcttgctttg |
76 |
Q |
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| T |
4611501 |
tctgtctgtatccgtgcttcaaagacccaaaccaaacgttttggcttgctttg |
4611449 |
T |
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