View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9868_high_17 (Length: 240)

Name: NF9868_high_17
Description: NF9868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9868_high_17
NF9868_high_17
[»] chr3 (13 HSPs)
chr3 (16-240)||(38028875-38029099)
chr3 (17-240)||(38040190-38040413)
chr3 (20-236)||(38033892-38034109)
chr3 (19-233)||(38036909-38037124)
chr3 (18-231)||(50909768-50909982)
chr3 (37-236)||(38024988-38025187)
chr3 (19-236)||(38031440-38031656)
chr3 (19-236)||(55084595-55084813)
chr3 (107-236)||(38043798-38043930)
chr3 (107-236)||(50904905-50905037)
chr3 (81-224)||(50911994-50912137)
chr3 (142-240)||(48840820-48840917)
chr3 (193-234)||(50913480-50913521)
[»] chr8 (2 HSPs)
chr8 (21-240)||(21604863-21605082)
chr8 (19-236)||(21607409-21607625)
[»] chr4 (6 HSPs)
chr4 (117-236)||(17970204-17970326)
chr4 (188-234)||(27444909-27444955)
chr4 (190-224)||(27563471-27563505)
chr4 (193-236)||(27523516-27523559)
chr4 (190-236)||(27505815-27505861)
chr4 (175-236)||(27554275-27554336)
[»] chr2 (1 HSPs)
chr2 (117-236)||(3073474-3073596)


Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 38029099 - 38028875
Alignment:
Q  16 cagtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatcttatatctgagaaattcatcttgttcatcaaaacatttg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  38029099 cagtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacacttatcttatatctgagaaattcatcttgttcttcaaaacatttg 38029000  T
Q  116 aaatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatcaaaagtattgaatgtgccaaagggctatcttgcagtgta 215  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38028999 aaatgggtttccgtttacctgcagctattagacgggcttcattcagcagtagccaaacatcaaaagtattgaatgtgccaaagggctatcttgcagtgta 38028900  T
Q  216 cgttggagagcaaatgaagcgattt 240  Q
    |||||||||||||||||||||||||    
T  38028899 cgttggagagcaaatgaagcgattt 38028875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 38040413 - 38040190
Alignment:
Q  17 agtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatcttatatctgagaaattcatcttgttcatcaaaacatttga 116  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38040413 agtgtcctccttcacaacaatcacaaatcactcaaacaatcaaacttatatacatttatcttacatctgagaaattcatcttgttcatcaaaacatttga 38040314  T
Q  117 aatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatcaaaagtattgaatgtgccaaagggctatcttgcagtgtac 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38040313 aatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatcaaaagtattgaatgtgccaaagggctatcttgcagtgtac 38040214  T
Q  217 gttggagagcaaatgaagcgattt 240  Q
    ||||||||||||||||||||||||    
T  38040213 gttggagagcaaatgaagcgattt 38040190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 38034109 - 38033892
Alignment:
Q  20 gtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatcttatatctgagaaattcatcttgttcatcaaaacat-ttgaaa 118  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| ||||||||||||| |||||||| |||||| |  ||||||    
T  38034109 gtcctccttcacaacaatcacaaatcactcaagcaatcaaacttatatacacttatcttacatctgagaaattcgtcttgttcttcaaaaaaaattgaaa 38034010  T
Q  119 tgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatcaaaagtattgaatgtgccaaagggctatcttgcagtgtacgt 218  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  38034009 tgggtttccgtttacctgcagctattagacgggcttcattcagcagtagtcaaacatcaaaagcattgaatgtgccaaagggctatcttgcagtgtacat 38033910  T
Q  219 tggagagcaaatgaagcg 236  Q
    ||||||||||||||||||    
T  38033909 tggagagcaaatgaagcg 38033892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 38037124 - 38036909
Alignment:
Q  19 tgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatcttatatctgagaaattcatcttgttcatcaaaacatt-tgaa 117  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||| || ||||||||||||||||||| |||||| |   ||||    
T  38037124 tgtcctccttcacaacaatcacaaatcactcaagcaaacaaacttatatacatttatcttacatttgagaaattcatcttgttcttcaaaaaaaactgaa 38037025  T
Q  118 atgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatcaaaagtattgaatgtgccaaagggctatcttgcagtgtacg 217  Q
    |||||||| |||||| |||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38037024 atgggtttccgtttacctgcagctattagacgggcttcctttagcagtagccaaacatccaaagtattgaatgtgccaaagggctatcttgcagtgtacg 38036925  T
Q  218 ttggagagcaaatgaa 233  Q
    ||||||||||||||||    
T  38036924 ttggagagcaaatgaa 38036909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 50909768 - 50909982
Alignment:
Q  18 gtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatcttatatctgagaaattcatcttgtt-catcaaaacatttga 116  Q
    |||||||| ||||||||| ||||||||||||||||||||||| |||  |||| ||||||||| |||||||||||||||||| || | |||||||||||||    
T  50909768 gtgtcctcattcacaacactcacaaatcactcaagcaatcaaacttggatacttttatcttacatctgagaaattcatcttatttcttcaaaacatttga 50909867  T
Q  117 aatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatcaaaagtattgaatgtgccaaagggctatcttgcagtgtac 216  Q
    ||||||||| |||||| | |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  50909868 aatgggtttccgtttaccagcagctattagacgagcttcatttagcagtagccaaacatcaaaagtattgaatgtgccaaagggttatcttgcagtgtat 50909967  T
Q  217 gttggagagcaaatg 231  Q
    |||||||||||||||    
T  50909968 gttggagagcaaatg 50909982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 37 - 236
Target Start/End: Complemental strand, 38025187 - 38024988
Alignment:
Q  37 tcacaaatcactcaagcaatcaatcttttatacatttatcttatatctgagaaattcatcttgttcatcaaaacatttgaaatgggttttcgtttatctg 136  Q
    |||||||||| |||||||| |||  ||  | |||||| ||||| ||||||||||||||  || ||| |||||||||||||||||||||| |||||| |||    
T  38025187 tcacaaatcattcaagcaaacaaatttagaaacatttttcttaaatctgagaaattcagttttttcttcaaaacatttgaaatgggtttccgtttacctg 38025088  T
Q  137 cagctattagacgggcttcattcagcagtagccaaacatca---aaagtattgaatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaa 233  Q
    |   |||||||||  ||||||| |  ||||||||| |||||   ||||   ||||||| |||||||||||||||||||| || |||||||||||||||||    
T  38025087 c---tattagacgaacttcatttacaagtagccaagcatcatcaaaagctgtgaatgtaccaaagggctatcttgcagtatatgttggagagcaaatgaa 38024991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 38031656 - 38031440
Alignment:
Q  19 tgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatcttatatctgagaaattcatcttgttcatcaaaacatttgaaa 118  Q
    |||||| |||||||||  |||||||||| |||||||| |||  ||  | |||||| ||||| ||| ||||||||||  || |||||||||||||||||||    
T  38031656 tgtccttcttcacaact-tcacaaatcattcaagcaaacaaatttagaaacatttttcttaaatcagagaaattcagttttttcatcaaaacatttgaaa 38031558  T
Q  119 tgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatca---aaagtattgaatgtgccaaagggctatcttgcagtgta 215  Q
    ||||||| | |||| ||||   |||||||||  ||||||| |  ||||||||| |||||   ||||   ||||||| |||||||||||||||||||| ||    
T  38031557 tgggtttccatttacctgc---tattagacgaacttcatttacaagtagccaagcatcatcaaaagctgtgaatgtaccaaagggctatcttgcagtata 38031461  T
Q  216 cgttggagagcaaatgaagcg 236  Q
     ||||||||||||||||||||    
T  38031460 tgttggagagcaaatgaagcg 38031440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 55084595 - 55084813
Alignment:
Q  19 tgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatcttatatctgagaaattcatcttgttcatcaaaacatttgaaa 118  Q
    ||||||| ||||||||  |||||||| ||||| |||| |||  ||  |||| ||| ||||| |||||| ||||||| ||||||  |||||||||||||||    
T  55084595 tgtcctctttcacaact-tcacaaattactcaggcaaacaaatttagatacctttttcttaaatctgataaattcagcttgttattcaaaacatttgaaa 55084693  T
Q  119 tgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatca--aaagtat-tgaatgtgccaaagggctatcttgcagtgta 215  Q
    | ||||| |||||| |||||||||||||| || ||||||| |   ||||||||||||||  ||| | | ||||||||||||| || | ||||||||||||    
T  55084694 t-ggtttccgtttacctgcagctattagaaggacttcatttacgggtagccaaacatcatcaaaatctgtgaatgtgccaaaagggtgtcttgcagtgta 55084792  T
Q  216 cgttggagagcaaatgaagcg 236  Q
     ||||||||| ||||||||||    
T  55084793 tgttggagagaaaatgaagcg 55084813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 107 - 236
Target Start/End: Original strand, 38043798 - 38043930
Alignment:
Q  107 aaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatca---aaagtattgaatgtgccaaagggcta 203  Q
    |||||||| ||||||| || | |||| ||||||||||   | |||||||||| || || ||||||||||||   |||||    |||||||||||| ||||    
T  38043798 aaacatttaaaatgggcttccatttacctgcagctatagtaagggcttcatttagaagcagccaaacatcattgaaagtcacaaatgtgccaaagagcta 38043897  T
Q  204 tcttgcagtgtacgttggagagcaaatgaagcg 236  Q
    ||||||||||||| |||||||| ||||||||||    
T  38043898 tcttgcagtgtactttggagaggaaatgaagcg 38043930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 236
Target Start/End: Complemental strand, 50905037 - 50904905
Alignment:
Q  107 aaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatcaaaagtattga---atgtgccaaagggcta 203  Q
    |||||||| ||||||| ||  ||||| | |||||||| ||| ||||||| || || ||||||||| |||||| |  |  ||   ||||||||||||| ||    
T  50905037 aaacatttaaaatgggcttctgtttaccagcagctataagaagggcttcctttagtagtagccaagcatcaacaaaagcgacaaatgtgccaaagggata 50904938  T
Q  204 tcttgcagtgtacgttggagagcaaatgaagcg 236  Q
    |||||||||||||||||||||  ||||||||||    
T  50904937 tcttgcagtgtacgttggagaagaaatgaagcg 50904905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 224
Target Start/End: Complemental strand, 50912137 - 50911994
Alignment:
Q  81 atctgagaaattcatcttgttcatcaaaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatca--- 177  Q
    ||||||||||||||  || ||| |||||| ||||||||||||||| |||||| ||||    ||||||||  ||||||| |   |||||||| |||||       
T  50912137 atctgagaaattcagttttttcttcaaaatatttgaaatgggtttccgtttacctgcc---attagacgaacttcatttacaggtagccaagcatcatca 50912041  T
Q  178 aaagtattgaatgtgccaaagggctatcttgcagtgtacgttggaga 224  Q
    |||||  ||||||||||||||||||||||||| || || ||||||||    
T  50912040 aaagttgtgaatgtgccaaagggctatcttgcggtatatgttggaga 50911994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 48840917 - 48840820
Alignment:
Q  142 attagacgggcttcattcagcagtagccaaacatcaaaagtattgaatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgattt 240  Q
    |||||||||| |||||| |||||||  ||  |||||||||||    ||||||||||||| ||||||||| ||||||| |||||| | ||||||||||||    
T  48840917 attagacgggtttcatttagcagtaaacat-catcaaaagtagcagatgtgccaaagggatatcttgcattgtacgtcggagaggagatgaagcgattt 48840820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 50913480 - 50913521
Alignment:
Q  193 ccaaagggctatcttgcagtgtacgttggagagcaaatgaag 234  Q
    ||||| ||||||||||||||||| ||||||||| ||||||||    
T  50913480 ccaaaaggctatcttgcagtgtatgttggagagaaaatgaag 50913521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 21605082 - 21604863
Alignment:
Q  21 tcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatcttatatctgagaaattcatcttgttcatcaaaacatttgaaatg 120  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21605082 tcctccttcacaacaatcacaaatcactcaagcaatcgatcttttatacatttatcttatatctgagaaattcatcttgttcttcaaaacatttgaaatg 21604983  T
Q  121 ggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatcaaaagtattgaatgtgccaaagggctatcttgcagtgtacgttg 220  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  21604982 ggtttccgtttacctgcagctattagacgggcttcattcagcagtagccaaacatcaaaagtattgaatgtgccaaagggctatcttgcagtgtaagtag 21604883  T
Q  221 gagagcaaatgaagcgattt 240  Q
    ||||||||||||||||||||    
T  21604882 gagagcaaatgaagcgattt 21604863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 21607625 - 21607409
Alignment:
Q  19 tgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatcttatatctgagaaattcatcttgttcatcaaaacatttgaaa 118  Q
    ||||||||||||||||  |||||||||| |||||||| |||  ||  | |||||| ||||| ||| ||||||||||  || ||| |||||||||||||||    
T  21607625 tgtcctccttcacaact-tcacaaatcattcaagcaaacaaatttagaaacatttttcttaaatcagagaaattcagttttttcttcaaaacatttgaaa 21607527  T
Q  119 tgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatca---aaagtattgaatgtgccaaagggctatcttgcagtgta 215  Q
    ||||||| |||||| ||||   |||||||||  ||||||| |  ||||||||| |||||   |||||  ||||||| |||||||| |||||||| || ||    
T  21607526 tgggtttccgtttacctgc---tattagacgaacttcatttacaagtagccaagcatcatcaaaagttgtgaatgtaccaaagggatatcttgcggtata 21607430  T
Q  216 cgttggagagcaaatgaagcg 236  Q
     ||||||||||||||||||||    
T  21607429 tgttggagagcaaatgaagcg 21607409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 236
Target Start/End: Original strand, 17970204 - 17970326
Alignment:
Q  117 aatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatca---aaagtattgaatgtgccaaagggctatcttgcagtg 213  Q
    |||||| || |||||| |||||||||| ||| |||   |||| ||||| |||||||| |||   ||||||   |||||||||||||| |||||||| |||    
T  17970204 aatgggcttccgtttacctgcagctataagaagggtgacatttagcagcagccaaacgtcattgaaagtagcaaatgtgccaaagggatatcttgcggtg 17970303  T
Q  214 tacgttggagagcaaatgaagcg 236  Q
    |||||||||||| ||||||||||    
T  17970304 tacgttggagaggaaatgaagcg 17970326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 27444955 - 27444909
Alignment:
Q  188 atgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaag 234  Q
    ||||||||||||| ||||||||||| |||||||||||| ||||||||    
T  27444955 atgtgccaaagggatatcttgcagtatacgttggagaggaaatgaag 27444909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 27563505 - 27563471
Alignment:
Q  190 gtgccaaagggctatcttgcagtgtacgttggaga 224  Q
    |||||||||||||||||||||||||||||||||||    
T  27563505 gtgccaaagggctatcttgcagtgtacgttggaga 27563471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 27523559 - 27523516
Alignment:
Q  193 ccaaagggctatcttgcagtgtacgttggagagcaaatgaagcg 236  Q
    |||||||||||||| ||||||||||| |||||| ||||||||||    
T  27523559 ccaaagggctatctagcagtgtacgtaggagagaaaatgaagcg 27523516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 27505861 - 27505815
Alignment:
Q  190 gtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcg 236  Q
    ||||||||||| ||||| ||||||||||| |||||| ||||||||||    
T  27505861 gtgccaaaggggtatctagcagtgtacgtaggagagaaaatgaagcg 27505815  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 27554275 - 27554336
Alignment:
Q  175 tcaaaagtattgaatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcg 236  Q
    ||||||| | || ||||||||||||| || |||||||| || ||||||||| ||||||||||    
T  27554275 tcaaaaggagtggatgtgccaaagggataccttgcagtatatgttggagaggaaatgaagcg 27554336  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 236
Target Start/End: Original strand, 3073474 - 3073596
Alignment:
Q  117 aatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatca---aaagtattgaatgtgccaaagggctatcttgcagtg 213  Q
    |||||| || |||||| |||||||||| ||| |||   |||| ||||| |||||||| |||   ||||||   |||||||||||||| |||||||| |||    
T  3073474 aatgggcttccgtttacctgcagctataagaagggtgacatttagcagcagccaaacgtcattgaaagtagcaaatgtgccaaagggatatcttgcggtg 3073573  T
Q  214 tacgttggagagcaaatgaagcg 236  Q
    |||||||||||| ||||||||||    
T  3073574 tacgttggagaggaaatgaagcg 3073596  T

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