View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9868_high_20 (Length: 210)
Name: NF9868_high_20
Description: NF9868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9868_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 49093412 - 49093238
Alignment:
| Q |
19 |
gagttgtcagaacgccgtgttacatggcgccagaggttctgttaggaagatattataccgagaaagttgatgtgtggagttgtgttttgtttggtacata |
118 |
Q |
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| T |
49093412 |
gagttgtcggaacgccgtgttacgtggcgccagaggttctgttaggaagatattataccgagaaagttgatttgtggagttgtgttctgtttggtacata |
49093313 |
T |
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| Q |
119 |
atgttgagcaggattcctcctttttacggtgattctacgtatgaggtttttgaagtggttattacggcgtatctc |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49093312 |
atgttgagcaggattcctcctttttacggtgattctacgtatgaggtttttgaagtggttattacggcgtatctc |
49093238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 19 - 171
Target Start/End: Complemental strand, 35545991 - 35545838
Alignment:
| Q |
19 |
gagttgtcagaacgccgtgttacatggcgccagaggttctgttaggaagatattataccgagaaagttgatgtgtggagttgtgttttg-tttggtacat |
117 |
Q |
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|||| ||| |||| |||| |||| |||| || |||||||| ||||||||| ||||||| |||||||||||||||||||| |||| | || ||| |||||| |
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| T |
35545991 |
gagtcgtcggaacaccgtattacgtggcaccggaggttctattaggaagagattatacagagaaagttgatgtgtggagctgtggtgtgcttttgtacat |
35545892 |
T |
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| Q |
118 |
aatgttgagcaggattcctcctttttacggtgattctacgtatgaggtttttga |
171 |
Q |
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|||||||||| |||||||||| |||||||||||||||||| |||| ||||||| |
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| T |
35545891 |
aatgttgagcgggattcctccgttttacggtgattctacggctgagatttttga |
35545838 |
T |
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