View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9868_high_4 (Length: 444)
Name: NF9868_high_4
Description: NF9868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9868_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 170 - 436
Target Start/End: Original strand, 46824387 - 46824653
Alignment:
| Q |
170 |
aactcttaaaattcgttctaggcaaggcttatttgcatccaaatcttctattctgatgatgaatagacacatcaaatatatcccggtggttatgcattat |
269 |
Q |
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| T |
46824387 |
aactcttaaaattcgttctaggcaaggattatttgcatccaaatcttctattctgatgatgaatagacacatcaaatatatcccggtggttatgcattat |
46824486 |
T |
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| Q |
270 |
gaagtcaatatagacacaaatgctgccaaatgtttgtattcaaatagacttcacttggggctaagttgttgttgttattagagtcatcagcagaaatcac |
369 |
Q |
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| T |
46824487 |
gaagtcaatatagacacaaatgctgccaaatgcttgtattcaaatagacttcacttgggcctaagttgttgttgttattagagtcatcagcagaaatcac |
46824586 |
T |
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| Q |
370 |
atcaataacactaacacctgaacatccatctcctccactatctttcatcatttccctcacctttgct |
436 |
Q |
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| T |
46824587 |
atcaataacactaacacctgaacatccatctcctccactatctttcatcatttccctcacccttgct |
46824653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 46820950 - 46821105
Alignment:
| Q |
17 |
ataaagaaagtgttaccacggtagtagctttctctctgtaacttttgagtaggattaacactttacttcaaagaccacgcttgcctactttctcttcatt |
116 |
Q |
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| T |
46820950 |
ataaagaaagtgttaccacagtagtagctttctctctgtaacttttgagtaggattaacactttacttcaaagaccacgcttgcctactttctcttcatt |
46821049 |
T |
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| Q |
117 |
gtttcttgccatcttatttttatttgtacagttcaacccaaacaccatttgccaac |
172 |
Q |
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| T |
46821050 |
gtttcttgccatcttatttttatttgtacagttcaacccagacaccattagccaac |
46821105 |
T |
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