View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9868_high_8 (Length: 407)
Name: NF9868_high_8
Description: NF9868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9868_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 3456393 - 3456084
Alignment:
| Q |
18 |
catcaggtatattacagtgagtattgtgtttatttcttctttacctgacattacttgcaaaaaatcttggtgtatagcatgacatataattcaatacttc |
117 |
Q |
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| T |
3456393 |
catcaggtatattacagtgagtattgtgtttatttcttctttacctgatattacttgcaaaaaaacttggtgtatggcttgtcatataattcaaaacttc |
3456294 |
T |
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| Q |
118 |
catgtcatgtgtaatagttaaattatatattttctattgaagttttagttgattcatcattttggatgcgaaatgtgtttttgcaaatgttatgaatttt |
217 |
Q |
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| T |
3456293 |
catgttatgtgtaatggttaaattatatatcttctatttaagttttagttgattcatcattttggatgctaaatttgtttttgcaaatgtaatgaatttt |
3456194 |
T |
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| Q |
218 |
tcaatctaaaaggccgactcagtgtcgtaaactggaccgtagtatttaaagatgagttgtaagttgaaaccctaagtagctactctgcagtgagagacga |
317 |
Q |
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| T |
3456193 |
tcaattttaaaggccgactcagtgttgtaaagtggaccatagtatttaaacatgagttgtaatttgaaaacctaagtagctactctgcagtcagagacga |
3456094 |
T |
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| Q |
318 |
aaggactatt |
327 |
Q |
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|||||||||| |
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| T |
3456093 |
aaggactatt |
3456084 |
T |
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