View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9868_high_9 (Length: 377)
Name: NF9868_high_9
Description: NF9868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9868_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 37715847 - 37715489
Alignment:
| Q |
1 |
tcgtgcggacgttgtggcacatatataattccatatcctctaagcaccgggccaacatgtggagaccctatgtacaacaagttcaattgtaacttattga |
100 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37715847 |
tcgtgtggaccttgtggcacatatataattccatatcctctaagcaccgggccaacatgtggagaccctatgtacaacaaattcaattgtaacttattga |
37715748 |
T |
|
| Q |
101 |
caggtcaggttagtttcatgatgccagatggaaaatcctatcgagttaccttgattgatgaagctggtagaaagttttatattcaaacgaatgatacaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37715747 |
caggtcaggttagtttcatgatgccagatggaaaatcctatcgagttaccttgattgatgaagctggtagaaagttttatatccaaacgaatgatacaaa |
37715648 |
T |
|
| Q |
201 |
tcactgtgatgattcaagtagttatcaaaatgataaacctagtttaccatttaatgtgactaattggtgttttaaagatgatcaaatagaggtcaattgg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37715647 |
tcactgtgatgattcaagtagttatcaaaatgataaacctagttcaccatttaatgtgactaattggtgttttaaagatgatcaaatagaggtcaattgg |
37715548 |
T |
|
| Q |
301 |
gcagcagcaccacaaccacaatgtgatgagtattttagctgcaaaagttggccccattc |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37715547 |
gcagcagcaccacaaccacaatgtgatgagtattttagctgcaaaagttggccccattc |
37715489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 123
Target Start/End: Complemental strand, 17560051 - 17559962
Alignment:
| Q |
34 |
tatcctctaagcaccgggccaacatgtggagaccctatgtacaacaagttcaattgtaacttattgacaggtcaggttagtttcatgatg |
123 |
Q |
| |
|
||||||||||||| | ||||| |||||||| |||| |||||||||||||||| |||| ||||| | | |||||||| ||||||||| |
|
|
| T |
17560051 |
tatcctctaagcatcaagccaaactgtggagagactatctacaacaagttcaattccaactaattgaaaagccaggttagcttcatgatg |
17559962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University