View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9868_low_10 (Length: 438)

Name: NF9868_low_10
Description: NF9868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9868_low_10
NF9868_low_10
[»] chr7 (1 HSPs)
chr7 (2-420)||(28521119-28521537)
[»] chr8 (5 HSPs)
chr8 (13-185)||(12726489-12726661)
chr8 (2-186)||(34293591-34293775)
chr8 (254-384)||(34293326-34293457)
chr8 (251-384)||(12726763-12726896)
chr8 (10-80)||(9506730-9506800)
[»] chr1 (2 HSPs)
chr1 (10-76)||(18214692-18214758)
chr1 (10-76)||(139462-139528)
[»] chr2 (1 HSPs)
chr2 (10-71)||(29560925-29560986)
[»] chr6 (2 HSPs)
chr6 (3-71)||(19823499-19823567)
chr6 (3-71)||(19888588-19888656)


Alignment Details
Target: chr7 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 2 - 420
Target Start/End: Complemental strand, 28521537 - 28521119
Alignment:
Q  2 tccaattgggatgaaatgacttcacatatgctgctacaccagcgacatgaggacatgccatggaagttccggatattattgaaaattctgaaaattgtgt 101  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28521537 tccatttgggatgaaatgacttcacatatgctgctacaccagcgacatgaggacatgccatggaagttccggatattattgaaaattctgaaaattgtgt 28521438  T
Q  102 atcccctgccaaaccagtgagtgatttcctaagagtataagatgccaagatgtcaatgcctggagctgcaatgtcaggctgcatcatatacattttaaaa 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28521437 atcccctgccaaaccagtgagtgatttcctaagagtataagatgccaagatgtcaatgcctggagctgcaatgtcaggctgcatcatatacattataaaa 28521338  T
Q  202 caccttcagttcattaaatacattctttatggaaaaataccatcaatagtaataccttgagaagatgtttggatcctggatttggtcctctagatgagaa 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28521337 caccttcagttcattaaatacattctttatggaaaaataccatcaatagtaataccttgagaagatgtttggatcctggatttggtcctctagatgagaa 28521238  T
Q  302 tgtagcagtaaatggagctagcactttttcttcatggctcttgtatatcactgctgatggtgaccttggttgaacaagaaattcagtttaattaagcgct 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28521237 tgtagcagtaaatggagctagcactttttcttcatggctcttgtatatcactgctgatggtgaccttggttgaacaagaaattcagtttaattaagcgct 28521138  T
Q  402 tagtgcatgcatgtatatc 420  Q
    |||||||||||||||||||    
T  28521137 tagtgcatgcatgtatatc 28521119  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 12726489 - 12726661
Alignment:
Q  13 tgaaatgacttcacatatgctgctacaccagcgacatgaggacatgccatggaagttccggatattattgaaaattctgaaaattgtgtatcccctgcca 112  Q
    |||||||||||||||||||||||||| ||||  |||||||| |||| ||| || || ||||| || | || ||||||||||||||| || || ||| | |    
T  12726489 tgaaatgacttcacatatgctgctactccagaaacatgagggcatgacattgatgtaccggacatcagtgtaaattctgaaaattgagtgtcgccttcta 12726588  T
Q  113 aaccagtgagtgatttcctaagagtataagatgccaagatgtcaatgcctggagctgcaatgtcaggctgcat 185  Q
    ||||| | | |||| || |||| ||||| |  |||||||||| |||||| |||||||  ||||||||||||||    
T  12726589 aaccactaattgatgtcttaagtgtatatgcagccaagatgttaatgccaggagctgttatgtcaggctgcat 12726661  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 2 - 186
Target Start/End: Complemental strand, 34293775 - 34293591
Alignment:
Q  2 tccaattgggatgaaatgacttcacatatgctgctacaccagcgacatgaggacatgccatggaagttccggatattattgaaaattctgaaaattgtgt 101  Q
    ||||||| || |||||||||||||||||||||||||  ||||  |  ||||| |||||||||||||| || || |||| || |||| |||||||||| ||    
T  34293775 tccaatttgggtgaaatgacttcacatatgctgctattccagaaatgtgagggcatgccatggaagtgccagacattagtgtaaatactgaaaattgagt 34293676  T
Q  102 atcccctgccaaaccagtgagtgatttcctaagagtataagatgccaagatgtcaatgcctggagctgcaatgtcaggctgcatc 186  Q
     |||||| | | || ||| | ||| | |||||| ||| | ||||||||||||  |||||| |||||||  |  ||||||||||||    
T  34293675 gtccccttctatactagtaattgagtgcctaagtgtaaatgatgccaagatgctaatgccaggagctgttacatcaggctgcatc 34293591  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 254 - 384
Target Start/End: Complemental strand, 34293457 - 34293326
Alignment:
Q  254 taccttgagaagatgtttggatcctggatttggtcctctagatgagaatgtagcagtaaatggagctagcactttttcttcatggctcttgtatatcact 353  Q
    ||||||||||| |||||  ||||||| |||||| || |||||||| || | ||||  |||||||||| | | |||  ||||||||||||| | |||||||    
T  34293457 taccttgagaacatgttgagatcctgaatttggacccctagatgaaaaagaagcaacaaatggagctggtattttcacttcatggctcttatgtatcact 34293358  T
Q  354 gctgatggtgaccttggttgaa-caagaaatt 384  Q
    ||||||||||| ||| |||||| |||||||||    
T  34293357 gctgatggtgatctttgttgaaccaagaaatt 34293326  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 251 - 384
Target Start/End: Original strand, 12726763 - 12726896
Alignment:
Q  251 taataccttgagaagatgtttggatcctggatttggtcctctagatgagaatgtagcagtaaatggagctagcactttttcttcatggctcttgtatatc 350  Q
    |||||||||||||| | | |  |||||||||||||| || |||||||| || | ||||  |||||||||| | | |||  |||| |||||||| | ||||    
T  12726763 taataccttgagaatacgctgagatcctggatttggacccctagatgaaaaagaagcaacaaatggagctggtattttcacttcctggctcttatgtatc 12726862  T
Q  351 actgctgatggtgaccttggttgaacaagaaatt 384  Q
    |||||||| ||||| ||  |||||||||||||||    
T  12726863 actgctgagggtgatctatgttgaacaagaaatt 12726896  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 9506800 - 9506730
Alignment:
Q  10 ggatgaaatgacttcacatatgctgctacaccagcgacatgaggacatgccatggaagttccggatattat 80  Q
    ||||||||||| ||||||||||| || || ||||| || |||||||||||||| || ||||| ||| ||||    
T  9506800 ggatgaaatgatttcacatatgcagcaactccagcaacgtgaggacatgccatagaggttccagattttat 9506730  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 18214758 - 18214692
Alignment:
Q  10 ggatgaaatgacttcacatatgctgctacaccagcgacatgaggacatgccatggaagttccggata 76  Q
    |||||||||||||||||||||||  | || ||||| |||||||| |||||||| || ||||||||||    
T  18214758 ggatgaaatgacttcacatatgcaacaactccagcaacatgagggcatgccatagaggttccggata 18214692  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 139462 - 139528
Alignment:
Q  10 ggatgaaatgacttcacatatgctgctacaccagcgacatgaggacatgccatggaagttccggata 76  Q
    ||||||||||| ||||||||||| || || |||||| ||||||| |||||||| || ||||| ||||    
T  139462 ggatgaaatgatttcacatatgcagcaactccagcggcatgagggcatgccatagaggttccagata 139528  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 29560986 - 29560925
Alignment:
Q  10 ggatgaaatgacttcacatatgctgctacaccagcgacatgaggacatgccatggaagttcc 71  Q
    ||||||||||| |||||||||||  | | |||||| ||||||||||||| ||| ||||||||    
T  29560986 ggatgaaatgatttcacatatgcaacaataccagcaacatgaggacatgacatagaagttcc 29560925  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 19823567 - 19823499
Alignment:
Q  3 ccaattgggatgaaatgacttcacatatgctgctacaccagcgacatgaggacatgccatggaagttcc 71  Q
    |||||| ||||||||||| |||||||||||  | || ||||| ||||| ||||||||||| || |||||    
T  19823567 ccaatttggatgaaatgatttcacatatgcaacaactccagcaacatggggacatgccatagaggttcc 19823499  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 19888656 - 19888588
Alignment:
Q  3 ccaattgggatgaaatgacttcacatatgctgctacaccagcgacatgaggacatgccatggaagttcc 71  Q
    |||||| ||||||||||| ||||||||||| || || ||||| ||||| ||||||| ||| || |||||    
T  19888656 ccaatttggatgaaatgatttcacatatgcagcaactccagcaacatgcggacatgacatagaggttcc 19888588  T

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