View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9868_low_11 (Length: 435)
Name: NF9868_low_11
Description: NF9868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9868_low_11 |
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| [»] scaffold0388 (2 HSPs) |
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Alignment Details
Target: scaffold0388 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: scaffold0388
Description:
Target: scaffold0388; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 196 - 416
Target Start/End: Complemental strand, 7622 - 7399
Alignment:
| Q |
196 |
tatatataagccatggttgaaaactaagcatattaaaaatagtctttcattc---ctgtataaaa-ctcatagacaccacaaaatataattttctctcct |
291 |
Q |
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| T |
7622 |
tatatataagccatggttgaaaactaagcatattaaaa-tagtctttcattcatactgtataaaaactcatagacaccacaaaatataattttctctcct |
7524 |
T |
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| Q |
292 |
ttatattaaaagagatttttatcccaaaaaataatcaaaataactatttcattttcccgtttggttgggtttggctgttttgtggtgcgcaccaatctta |
391 |
Q |
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| T |
7523 |
ttatattaaaagagatttttattccaaaatttaatcaaaataactatttcattttcccgtttggttgggtttggctgtcttgtggtgtccaccaatctta |
7424 |
T |
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| Q |
392 |
tttttcttttgtttcttcatagaga |
416 |
Q |
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| T |
7423 |
tttttcttttgtttcttcatagaga |
7399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0388; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 7819 - 7684
Alignment:
| Q |
1 |
tttcaagtgctgagtgaggaaagtaaatgaggttaaaagggagtgactcacggttctctctagctgttgcaatttgtcaagtggagcaagagattcgggg |
100 |
Q |
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||||| ||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7819 |
tttcatgtgctgagtgaggaaagtacatgaggttaaaagcgagcgactcacggttctctctagctgttgcaatttgtcaagtggagcaagagattcgggg |
7720 |
T |
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| Q |
101 |
gctatctatagtaagtgccattgattttagattctc |
136 |
Q |
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| T |
7719 |
gctatctatagtaagggccatttattttagattctc |
7684 |
T |
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