View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9868_low_12 (Length: 435)

Name: NF9868_low_12
Description: NF9868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9868_low_12
NF9868_low_12
[»] chr3 (9 HSPs)
chr3 (1-412)||(14335574-14335988)
chr3 (129-412)||(14331614-14331897)
chr3 (138-387)||(14331258-14331510)
chr3 (138-387)||(14335218-14335470)
chr3 (248-359)||(11605502-11605614)
chr3 (271-412)||(13752918-13753059)
chr3 (271-412)||(13766321-13766462)
chr3 (290-412)||(11615596-11615718)
chr3 (315-364)||(13739508-13739557)
[»] chr2 (4 HSPs)
chr2 (167-411)||(8714961-8715206)
chr2 (295-358)||(8714823-8714886)
chr2 (297-358)||(8671994-8672055)
chr2 (138-209)||(8671830-8671903)
[»] chr4 (1 HSPs)
chr4 (1-86)||(48279503-48279588)
[»] chr6 (1 HSPs)
chr6 (271-357)||(35079184-35079270)


Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 14335988 - 14335574
Alignment:
Q  1 ttgattgagatagtttttggattgaaatctttgtcttttactcggcccgcgattattaggagaagggtagatttgcatgtaccacttaagtctttcatat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14335988 ttgattgagatagtttttggattgaaatctttgtcttttactcggcccgcgattattaggagaagggtagatttgcttgtaccacttaagtctttcatat 14335889  T
Q  101 cacaaatatgtnnnnnnnnnnnnnnnnn---attcatcaagtgatgaaattgacctatgtaatgatgacacctaagaattcattcctttatgaccttgtg 197  Q
    |||||||||||                    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14335888 cacaaatatgtttcttcttcttcttcttcttattcatcaagtgatgaaattgacctatgtaatgatgacacctaagaattcattcctttatgaccttgtg 14335789  T
Q  198 ccaaatggagacgattaatagaaacttaccccggatcctctctggtgtatacctccaagtttagatcctatagtttgctagtagttggtgtgttcattgt 297  Q
     ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14335788 acaaatggagacaattaatataaacttaccccggatcctctctggtgtatacctccaagtttagatcctatagtttgctagtagttggtgtgttcattgt 14335689  T
Q  298 tcaatgtaattcctgttctaaatagaggttaattccaacaaagaaaaaatatgaagaaatacatgaacaaatttttcaaaattcttttgtctgttaaaaa 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14335688 tcaatgtaattcctgttctaaatagaggttaattccaacaaagaaaaaatatgaagaaatacatgaacaaatttttcaaaattcttttgtttgttaaaaa 14335589  T
Q  398 tcttgggagtggcga 412  Q
    |||||||||||||||    
T  14335588 tcttgggagtggcga 14335574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 129 - 412
Target Start/End: Complemental strand, 14331897 - 14331614
Alignment:
Q  129 attcatcaagtgatgaaattgacctatgtaatgatgacacctaagaattcattcctttatgaccttgtgccaaatggagacgattaatagaaacttaccc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||    
T  14331897 attcatcaagtgatgaaattgacctatgtaatgatgacacctaagaattcattcctttatgaccttgtgacaaatggagacaattaatataaacttaccc 14331798  T
Q  229 cggatcctctctggtgtatacctccaagtttagatcctatagtttgctagtagttggtgtgttcattgttcaatgtaattcctgttctaaatagaggtta 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14331797 cggatcctctctggtgtatacctccaagtttagatcctatagtttgctagtagttggtgtgttcattgttcaatgtaattcctgttctaaatagaggtta 14331698  T
Q  329 attccaacaaagaaaaaatatgaagaaatacatgaacaaatttttcaaaattcttttgtctgttaaaaatcttgggagtggcga 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  14331697 attccaacaaagaaaaaatatgaagaaatacatgaacaaatttttcaaaattcttttgtttgttaaaaatcttgggagtggcga 14331614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 138 - 387
Target Start/End: Original strand, 14331258 - 14331510
Alignment:
Q  138 gtgatgaaattgacctatgtaatgatgacac--ctaagaattcattcctttatgaccttgtgccaaatggagacgattaatagaaacttaccccggatcc 235  Q
    ||||||||| |||||| | ||||||||||||  ||||||| ||| ||||||||||||||||| ||||||||||||  |   |  ||||||||||  || |    
T  14331258 gtgatgaaagtgacctctctaatgatgacacacctaagaagtcagtcctttatgaccttgtgacaaatggagacgtctgggatcaacttaccccatatac 14331357  T
Q  236 tctctggtgtatacctccaagtttagatcctatagtttg-ctagtagttggtgtgttcattgttcaatgtaattcctgttctaaatagaggttaattcca 334  Q
    ||| |||||| |||||||||||| |   |||| |||||  | ||||||||| | ||||| |||||||||| ||| |||| |||||| |||||| |||| |    
T  14331358 tctttggtgtttacctccaagttcactacctagagtttttccagtagttggcgcgttcagtgttcaatgtgatttctgtactaaatggaggttcattcta 14331457  T
Q  335 acaaagaaaaaatatgaagaaatacatgaacaaatttttcaaaattcttttgt 387  Q
     |||||||||||||||||||||||| |||||| ||  |||||||| |||||||    
T  14331458 gcaaagaaaaaatatgaagaaatacgtgaacatatcattcaaaatccttttgt 14331510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 138 - 387
Target Start/End: Original strand, 14335218 - 14335470
Alignment:
Q  138 gtgatgaaattgacctatgtaatgatgacac--ctaagaattcattcctttatgaccttgtgccaaatggagacgattaatagaaacttaccccggatcc 235  Q
    ||||||||| |||||| | ||||||||||||  ||||||| ||| ||||||||||||||||| ||||||||||||  |   |  ||||||||||  || |    
T  14335218 gtgatgaaagtgacctctctaatgatgacacacctaagaagtcagtcctttatgaccttgtgacaaatggagacgtctgggatcaacttaccccatatac 14335317  T
Q  236 tctctggtgtatacctccaagtttagatcctatagtttg-ctagtagttggtgtgttcattgttcaatgtaattcctgttctaaatagaggttaattcca 334  Q
    ||| |||||| |||||||||||| |   |||| |||||  | ||||||||| | ||||| |||||||||| ||| |||| |||||| |||||| |||| |    
T  14335318 tctttggtgtttacctccaagttcactacctagagtttttccagtagttggcgcgttcagtgttcaatgtgatttctgtactaaatggaggttcattcta 14335417  T
Q  335 acaaagaaaaaatatgaagaaatacatgaacaaatttttcaaaattcttttgt 387  Q
     |||||||||||||||||||||||| |||||| ||  |||||||| |||||||    
T  14335418 gcaaagaaaaaatatgaagaaatacgtgaacatatcattcaaaatccttttgt 14335470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 248 - 359
Target Start/End: Original strand, 11605502 - 11605614
Alignment:
Q  248 acctccaagtttagatcctatagttt-gctagtagttggtgtgttcattgttcaatgtaattcctgttctaaatagaggttaattccaacaaagaaaaaa 346  Q
    ||||||||||| || ||||| ||||| || ||||||||||| ||||| |||||||||||||||||||| ||||| |||||| ||||||||||||||||||    
T  11605502 acctccaagttcagctcctaaagttttgccagtagttggtgcgttcactgttcaatgtaattcctgttataaatggaggttgattccaacaaagaaaaaa 11605601  T
Q  347 tatgaagaaatac 359  Q
    |||||||||||||    
T  11605602 tatgaagaaatac 11605614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 271 - 412
Target Start/End: Complemental strand, 13753059 - 13752918
Alignment:
Q  271 tttgctagtagttggtgtgttcattgttcaatgtaattcctgttctaaatagaggttaattccaacaaagaaaaaatatgaagaaatacatgaacaaatt 370  Q
    ||||| |||||||||||  |||  |||||||||| ||| ||||||||||| |||||||| ||||||  ||||||||||||||||||||| |||||| |      
T  13753059 tttgccagtagttggtgctttcgctgttcaatgtcattactgttctaaatggaggttaactccaacggagaaaaaatatgaagaaatacgtgaacataac 13752960  T
Q  371 tttcaaaattcttttgtctgttaaaaatcttgggagtggcga 412  Q
     ||||| || ||||||| ||| ||||  || |||||||||||    
T  13752959 cttcaacatccttttgtttgtgaaaatgctcgggagtggcga 13752918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 271 - 412
Target Start/End: Complemental strand, 13766462 - 13766321
Alignment:
Q  271 tttgctagtagttggtgtgttcattgttcaatgtaattcctgttctaaatagaggttaattccaacaaagaaaaaatatgaagaaatacatgaacaaatt 370  Q
    ||||| |||||||||||  |||  |||||||||| ||| ||||||||||| |||||||| ||||||  ||||||||||||||||||||| |||||| |      
T  13766462 tttgccagtagttggtgctttcgctgttcaatgtcattactgttctaaatggaggttaactccaacggagaaaaaatatgaagaaatacgtgaacataac 13766363  T
Q  371 tttcaaaattcttttgtctgttaaaaatcttgggagtggcga 412  Q
     ||||| || ||||||| ||| ||||  || |||||||||||    
T  13766362 cttcaacatccttttgtttgtgaaaatgctcgggagtggcga 13766321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 290 - 412
Target Start/End: Complemental strand, 11615718 - 11615596
Alignment:
Q  290 ttcattgttcaatgtaattcctgttctaaatagaggttaattccaacaaagaaaaaatatgaagaaatacatgaacaaatttttcaaaattcttttgtct 389  Q
    |||| ||||||||||  ||| |||| ||||| ||||||  |||| |||||| |||||||||||||||||| |||| | ||  |||||||| ||||||| |    
T  11615718 ttcactgttcaatgtgcttcttgttataaatggaggttggttccgacaaaggaaaaatatgaagaaatacgtgaatatatccttcaaaatccttttgttt 11615619  T
Q  390 gttaaaaatcttgggagtggcga 412  Q
    || ||||| || | |||||||||    
T  11615618 gtgaaaaagctcgtgagtggcga 11615596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 364
Target Start/End: Complemental strand, 13739557 - 13739508
Alignment:
Q  315 ctaaatagaggttaattccaacaaagaaaaaatatgaagaaatacatgaa 364  Q
    |||||| ||||||||||||||||||| |||||||||||||||||| ||||    
T  13739557 ctaaatggaggttaattccaacaaaggaaaaatatgaagaaatacttgaa 13739508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 167 - 411
Target Start/End: Complemental strand, 8715206 - 8714961
Alignment:
Q  167 acctaagaattcattcctttatgaccttgtgccaaatggagacgattaatagaaacttaccccggatcctctctggtgtatacctccaagtttagatcct 266  Q
    ||||||||| | | |||||||||||| |||| ||||||||||| |   | |  |||||||| | |||||||| ||||||  |||||||| || || || |    
T  8715206 acctaagaagttagtcctttatgaccatgtgacaaatggagacaaccgaaatcaacttaccactgatcctctttggtgtgaacctccaaattcagctctt 8715107  T
Q  267 atagtttg-ctagtagttggtgtgttcattgttcaatgtaattcctgttctaaatagaggttaattccaacaaagaaaaaatatgaagaaatacatgaac 365  Q
    | |||||  | | |||||||   ||||| |||||||||| |||| |||||||||| |||||| |||||||||||||||||||||||| |||||| |||||    
T  8715106 agagtttttcgaatagttggcacgttcactgttcaatgtgattcgtgttctaaatggaggttgattccaacaaagaaaaaatatgaataaatacgtgaac 8715007  T
Q  366 aaatttttcaaaattcttttgtctgttaaaaatcttgggagtggcg 411  Q
    | ||  |||||||| ||||||| ||| | ||| || ||||||||||    
T  8715006 atatccttcaaaatccttttgtttgtgataaagctcgggagtggcg 8714961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 295 - 358
Target Start/End: Original strand, 8714823 - 8714886
Alignment:
Q  295 tgttcaatgtaattcctgttctaaatagaggttaattccaacaaagaaaaaatatgaagaaata 358  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8714823 tgttcaatgtgattcctgttctaaatggaggttaattccaacaaagaaaaaatatgaagaaata 8714886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 358
Target Start/End: Original strand, 8671994 - 8672055
Alignment:
Q  297 ttcaatgtaattcctgttctaaatagaggttaattccaacaaagaaaaaatatgaagaaata 358  Q
    |||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  8671994 ttcaatgtgattcctgttctaaatggaggttgattccaacaaagaaaaaatatgaagaaata 8672055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 209
Target Start/End: Original strand, 8671830 - 8671903
Alignment:
Q  138 gtgatgaaattgacctatgtaatgatgacac--ctaagaattcattcctttatgaccttgtgccaaatggagac 209  Q
    ||||||||| |||||| | ||||||||||||  ||||||| ||| |||||||||||| | || |||||||||||    
T  8671830 gtgatgaaagtgacctctctaatgatgacacacctaagaagtcagtcctttatgaccatatgacaaatggagac 8671903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 48279588 - 48279503
Alignment:
Q  1 ttgattgagatagtttttggattgaaatctttgtcttttactcggcccgcgattattaggagaagggtagatttgcatgtaccact 86  Q
    ||||||||||||||||| || ||||||||||||||||||| ||| ||||||||||||   |||||||| ||||||| ||| |||||    
T  48279588 ttgattgagatagttttggggttgaaatctttgtcttttattcgccccgcgattattctaagaagggtggatttgcctgtgccact 48279503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 357
Target Start/End: Original strand, 35079184 - 35079270
Alignment:
Q  271 tttgctagtagttggtgtgttcattgttcaatgtaattcctgttctaaatagaggttaattccaacaaagaaaaaatatgaagaaat 357  Q
    ||||| || ||||||||  |||| ||||||||||  |  ||||| ||||| |||||| |||||||| ||| ||||||||||||||||    
T  35079184 tttgccagcagttggtgctttcactgttcaatgtgctaactgttttaaatggaggttgattccaaccaaggaaaaatatgaagaaat 35079270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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