View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9868_low_13 (Length: 425)
Name: NF9868_low_13
Description: NF9868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9868_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 4 - 413
Target Start/End: Complemental strand, 3456022 - 3455613
Alignment:
| Q |
4 |
tttgaaccaggatttctgttttaacattctgattatctcttccaggacaaagagttgcgctatcgttttatctataatcattttccaagtttacaagaag |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3456022 |
tttgaaccaggatttctgttttaacattctgattatctcttccaggacaaagagttgcgctatcgttttatctataatcattttccaagtttacaagaag |
3455923 |
T |
|
| Q |
104 |
aggtaatgatttcttttgaagctcatgctgcaaggttatatacaactttataattttatattaaaccaaaagctgcttaatgtttctgaagaaacttgtt |
203 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||| || ||| |||||| |||||||| || |
|
|
| T |
3455922 |
aggtaatgatttcttttgaagctcttgttgcaaggttatatgcaactttataattttatattaaaccaaaagcagcataaaatttctgcagaaacttctt |
3455823 |
T |
|
| Q |
204 |
taaaatagagttttctttgctcttcatgagttaatttacttgctcataatttttccaggacattataggaaaaacagatgtcgaaattttcaccggagca |
303 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3455822 |
taaaatagagtattctttgctcttcatgagttaatttacttgctcgtaatttttccaggacattataggaaaaacagatgtcgaaattttcacgggagca |
3455723 |
T |
|
| Q |
304 |
ggtgtgaaggaatctcaagattttaagagagaagtaatggagaaaggagtacctgcaaaaaaggaaataacttttgagacggaactatttggattcaaga |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
3455722 |
ggtgtgaaggaatctcaagattttaagagagaagtaatggagaaaggagtacctgcaaaaaaggaaataacttttgagacagaactatttggatttaaga |
3455623 |
T |
|
| Q |
404 |
catttttgat |
413 |
Q |
| |
|
|||||||||| |
|
|
| T |
3455622 |
catttttgat |
3455613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 43 - 411
Target Start/End: Complemental strand, 3480588 - 3480217
Alignment:
| Q |
43 |
ttccaggacaaagagttgcgctatcgttttatctataatcattttccaagtttacaagaagaggtaatgatttcttttgaagctcatgctgcaaggttat |
142 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||| | ||| || || || ||||||||| | |
|
|
| T |
3480588 |
ttccaggacaaagagttgcggtatcgctttatctataatcattttccaagtttacaagaggaggtaatgattcttgttggaggtcttgttgcaaggttgt |
3480489 |
T |
|
| Q |
143 |
-atacaact---ttataattttatattaaaccaaaagctgcttaatgtttctgaagaaacttgtttaaaatagagttttctttgctcttcatgagttaat |
238 |
Q |
| |
|
|| || | || | |||||| ||||||||||||| || ||| ||| | |||| || |||| ||||||||||||||| | ||||||| ||| | |
|
|
| T |
3480488 |
gattgaattgcattgtgattttaagttaaaccaaaagcagcataaaatttgtagtgaaatttctttagaatagagttttctttctttttcatgatttatt |
3480389 |
T |
|
| Q |
239 |
ttacttgctcataatttttccaggacattataggaaaaacagatgtcgaaattttcaccggagcaggtgtgaaggaatctcaagattttaagagagaagt |
338 |
Q |
| |
|
| |||||| ||||| ||| ||||||| | ||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3480388 |
tgacttgcacataaattt-ccaggacctcataggaaaaacggatgttgaaattttcacgggagcaggtgtgaaggagtctcaagattttaagagagaagt |
3480290 |
T |
|
| Q |
339 |
aatggagaaaggagtacctgcaaaaaaggaaataacttttgagacggaactatttggattcaagacatttttg |
411 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||| |||||||||||| |
|
|
| T |
3480289 |
aatggagaaaggagtacctgcaaaaagggaaataacttttgagacagaactacttggatcaaagacatttttg |
3480217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 253 - 413
Target Start/End: Original strand, 48694573 - 48694733
Alignment:
| Q |
253 |
tttttccaggacattataggaaaaacagatgtcgaaattttcaccggagcaggtgtgaaggaatctcaagattttaagagagaagtaatggagaaaggag |
352 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| ||||| ||| | ||||| ||||| |||||||||||||| ||||| |||| |||||| |
|
|
| T |
48694573 |
tttttccaggacataataggaaaaactgatgtcgaaatattcactggatctggtgttaaggagaaccaagattttaagagggaagttttggaaaaaggat |
48694672 |
T |
|
| Q |
353 |
tacctgcaaaaaaggaaataacttttgagacggaactatttggattcaagacatttttgat |
413 |
Q |
| |
|
| |||||||||| |||||| ||||||||||| ||||||||||||| |||||||| ||||| |
|
|
| T |
48694673 |
tgcctgcaaaaagggaaatcacttttgagacagaactatttggatcaaagacattcttgat |
48694733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 48694423 - 48694487
Alignment:
| Q |
46 |
caggacaaagagttgcgctatcgttttatctataatcattttccaagtttacaagaagaggtaat |
110 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| || || ||||||||||| || || |||||||| |
|
|
| T |
48694423 |
caggacaaagagttgcggtatcgctttatctacaaccactttccaagtttgcatgaggaggtaat |
48694487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University