View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9868_low_15 (Length: 415)
Name: NF9868_low_15
Description: NF9868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9868_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Complemental strand, 25618921 - 25618545
Alignment:
| Q |
18 |
ttatggactaaactgaggtttggtttcagaacagtagtaacttacttatatcataatttcataaatcatctaaatgaatcatgcatgaaaaagaccaaaa |
117 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25618921 |
ttatggactaaacttcggtttggtttcagaacagtagtaacttacttatatcataattttataaatcatctaaatgaatcatgcatgaaaaagaccaaaa |
25618822 |
T |
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| Q |
118 |
ttacctgaagcatgcgccaattcggtacattagaaagagcattagagacattagagattgttccctgaggctgaacatatctcatccttaaagattcttc |
217 |
Q |
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| T |
25618821 |
ttacctgaagcatgcgccaattcggtacattagaaagagcattagaga---------ttgttccctgaggctgaacatatctcatccttaaagattcttc |
25618731 |
T |
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| Q |
218 |
agtcttcaaagaaagcttaactcccattccagattcccaattaatcttgattgcttcatcaacaactttagcatccacaacaaaatcattccaattagga |
317 |
Q |
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| T |
25618730 |
attcttcaaagaaagcttaactcccattccagattcccaattaatcttgattgcttcatcaacaactttagcatccacaacaaaatcattccaattagga |
25618631 |
T |
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| Q |
318 |
ctcggataatacacaacttcaaatgccatactcttctcggccaattctgctgccttgataaccgttttctcagttaacttctcctt |
403 |
Q |
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| T |
25618630 |
ctcggataatacacaacttcaaatgccatactcttctcggccaattctgctgccttgataaccgttttctcagttaacttctcctt |
25618545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 119 - 349
Target Start/End: Original strand, 26097093 - 26097329
Alignment:
| Q |
119 |
tacctgaagcatgcgccaattcggtacattagaaagagcattagagacattagagattgttccctgaggctgaacatatctcatccttaaa------gat |
212 |
Q |
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| T |
26097093 |
tacctgaagcatgcgccaattagggacattagaaggagctttataaacatctgagtttgtcccccgaggctgataaaatatcatctttgaatttgaagat |
26097192 |
T |
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| Q |
213 |
tcttcagtcttcaaagaaagcttaactcccattccagattcccaattaatcttgattgcttcatcaacaactttagcatccacaacaaaatcattccaat |
312 |
Q |
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||||| ||||||||| |||||| ||| |||||||||| |||| ||||||| || | ||||||||||| || |||||| | ||||||||| |||||| |
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| T |
26097193 |
tcttctttcttcaaaggaagcttgactttcattccagatgtccaactaatcttcatgccgtcatcaacaacatttgcatcctctacaaaatcaatccaat |
26097292 |
T |
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| Q |
313 |
taggactcggataatacacaacttcaaatgccatact |
349 |
Q |
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| T |
26097293 |
tcgctctcggataatacaaaacttcaaatgccatact |
26097329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 230 - 364
Target Start/End: Complemental strand, 25090479 - 25090345
Alignment:
| Q |
230 |
aagcttaactcccattccagattcccaattaatcttgattgcttcatcaacaactttagcatccacaacaaaatcattccaattaggactcggataatac |
329 |
Q |
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|||||| | |||||||||| |||||||| | |||| || || ||||||||||| | |||||||| ||||||||| |||||||| ||||||||||| |
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| T |
25090479 |
aagcttgattcccattccaaattcccaaccattcttcatagcctcatcaacaacactcgcatccaccacaaaatcacaccaattagccgtcggataatac |
25090380 |
T |
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| Q |
330 |
acaacttcaaatgccatactcttctcggccaattc |
364 |
Q |
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| T |
25090379 |
acaacttgaaatgccatgttcttcccagccaattc |
25090345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 230 - 364
Target Start/End: Complemental strand, 25148449 - 25148315
Alignment:
| Q |
230 |
aagcttaactcccattccagattcccaattaatcttgattgcttcatcaacaactttagcatccacaacaaaatcattccaattaggactcggataatac |
329 |
Q |
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| T |
25148449 |
aagcttgattcccattccaaattcccaaccattcttcatagcctcatcaacaacactcgcatccaccacaaaatcacaccaattagccgtcggataatac |
25148350 |
T |
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| Q |
330 |
acaacttcaaatgccatactcttctcggccaattc |
364 |
Q |
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| T |
25148349 |
acaacttgaaatgccatgttcttcccagccaattc |
25148315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 208 - 372
Target Start/End: Complemental strand, 35273857 - 35273690
Alignment:
| Q |
208 |
aagattcttcagtcttcaaagaaagcttaactcccattccagattcccaattaatcttgattgcttcatcaacaactttagcatccacaacaaaatcatt |
307 |
Q |
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||||||| ||||||||||| || | ||||||| ||||||||||| ||||||||||| ||||||| | || ||| ||||||||| ||||||| | |
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| T |
35273857 |
aagattcatcagtcttcaagcaatgtttaactctcattccagattgccaattaatctgcattgctttctttacggcttcagcatccaccacaaaattaca |
35273758 |
T |
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| Q |
308 |
ccaat---taggactcggataatacacaacttcaaatgccatactcttctcggccaattctgctgcct |
372 |
Q |
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| T |
35273757 |
ccaatgactagccgtcggataataaataacttcaaaagtcatattcttatccgccaattctgctgcct |
35273690 |
T |
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