View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9868_low_16 (Length: 412)
Name: NF9868_low_16
Description: NF9868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9868_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 25253298 - 25252912
Alignment:
| Q |
1 |
agggtgaaaaacaaaacagagaatgtgtccatcaaattcagattgaatatt-aattaaactcagcgatctgtaagtaaagatgacacaataataccttca |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25253298 |
agggtgaaaaacaaaacagagaatgtgtccatcaaattcagattgaatattgaattaaactcagcgatctgtaagtaaagatgacacaataataccttca |
25253199 |
T |
|
| Q |
100 |
tgcataaataaatacaaaaggaggatgagtgctccaacagacagaattatatcccacattcgctctatgaaatttctaccaaaaattttagtggccatac |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25253198 |
tgcataaataaatacaaaaggaggatgagtgctccaacagacagaattata-cccacattcgctctatgaaatttctaccataaattttagtggccatac |
25253100 |
T |
|
| Q |
200 |
taataggagcactttcagttccaaggctatcttcctctctcgctgagttagaaatacctgaaatgcaagggaagaaatgtttaaagagctgattgaaaaa |
299 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25253099 |
taataggagcactttcagctccaaggctatcttcctctctcgctgagttagaaatacctgaaatgcaagggaagaaatgtttaaagagctgattgaaaaa |
25253000 |
T |
|
| Q |
300 |
gaagaataataaaaaatttcggcaagttcactattgctattccaagttttgaattatgtttctgcatactccagcatagatatatata |
387 |
Q |
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| T |
25252999 |
gaagaataataaaaaatttcggcaagttcactattgctattccaagttttgaattctgtttctgcatactccaacatagatatatata |
25252912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 48140659 - 48140273
Alignment:
| Q |
1 |
agggtgaaaaacaaaacagagaatgtgtccatcaaattcagattgaatatt-aattaaactcagcgatctgtaagtaaagatgacacaataataccttca |
99 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48140659 |
agggtgaaaaacaaaacagagaatgtgtccatcaaattcagattgaatattgaattaaactcagcgatctgtaagtaaagatgacacaataataccttca |
48140560 |
T |
|
| Q |
100 |
tgcataaataaatacaaaaggaggatgagtgctccaacagacagaattatatcccacattcgctctatgaaatttctaccaaaaattttagtggccatac |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
48140559 |
tgcataaataaatacaaaaggaggatgagtgctccaacagacagaattata-cccacattcgctctatgaaatttctaccataaattttagtggccatac |
48140461 |
T |
|
| Q |
200 |
taataggagcactttcagttccaaggctatcttcctctctcgctgagttagaaatacctgaaatgcaagggaagaaatgtttaaagagctgattgaaaaa |
299 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48140460 |
taataggagcactttcagctccaaggctatcttcctctctcgctgagttagaaatacctgaaatgcaagggaagaaatgtttaaagagctgattgaaaaa |
48140361 |
T |
|
| Q |
300 |
gaagaataataaaaaatttcggcaagttcactattgctattccaagttttgaattatgtttctgcatactccagcatagatatatata |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
48140360 |
gaagaataataaaaaatttcggcaagttcactattgctattccaagttttgaattctgtttctgcatactccaacatagatatatata |
48140273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 32012020 - 32011946
Alignment:
| Q |
1 |
agggtgaaaaacaaaacagagaatgtgtccatcaaattcagattgaatatt-aattaaactcagcgatctgtaagt |
75 |
Q |
| |
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||||||||||||||||||||| ||||| |||||| |||||||||||||| |||||||||||||||| ||||||| |
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| T |
32012020 |
agggtgaaaaacaaaacagag-atgtgcaaatcaaactcagattgaatattgaattaaactcagcgatttgtaagt |
32011946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 282 - 351
Target Start/End: Complemental strand, 32033650 - 32033581
Alignment:
| Q |
282 |
aaagagctgattgaaaaagaagaataataaaaaatttcggcaagttcactattgctattccaagttttga |
351 |
Q |
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|||||||||||||||||||||| | ||||| |||||||| ||||| ||| ||| | || ||||||||||| |
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| T |
32033650 |
aaagagctgattgaaaaagaagtagaataacaaatttcgacaagtgcacaattacaatgccaagttttga |
32033581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 31791623 - 31791560
Alignment:
| Q |
1 |
agggtgaaaaacaaaacagagaatgtgtccatcaaattcagattgaatatt-aattaaactcag |
63 |
Q |
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||||||||||||||||||||||||| | |||||||||||||||| |||| |||||| ||||| |
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| T |
31791623 |
agggtgaaaaacaaaacagagaatgagcgaatcaaattcagattgactattgaattaagctcag |
31791560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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