View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9868_low_19 (Length: 358)
Name: NF9868_low_19
Description: NF9868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9868_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 15 - 346
Target Start/End: Original strand, 39525189 - 39525520
Alignment:
| Q |
15 |
gtgggcatgttgaaggttgagattttgaagtgaattgtattgattgcagggagcttattgagaggataatcacgttgggattttactatagagagttgga |
114 |
Q |
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| T |
39525189 |
gtgggcatgttgaaggttgagattttgaagtgaattgtattgattgcagggagcttattgagaggataatcacgttgggattttactatagagagttgga |
39525288 |
T |
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| Q |
115 |
acgattttcggccaagtctaggaatttaaactggataaggtctgaaaatgccaaccctttggagaataaggagaagcctagtgtttatcgtagggctctt |
214 |
Q |
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| T |
39525289 |
acgattttcggccaagtctaggaatttaaactggataaggtctgaaaatgctaaccctttggagaataaggagaagcctagtgtttatcgtagggctctt |
39525388 |
T |
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| Q |
215 |
gctaatggcattgttgagatacttgcagtttattcgtcttccattttgcatattgagcagttgttgttgtctgaaacaatgcccattttggcaacagtta |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39525389 |
gctaatggcattgttgagatacttgcagtttattcgtcttccattttgcatattgagcagctgttgttgtctgaaacaatgcccattttggcaacagtta |
39525488 |
T |
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| Q |
315 |
ctcaagggcttaataaggtgaatttctacctt |
346 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
39525489 |
ctcaagggcttaataaggtgaatttctacctt |
39525520 |
T |
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