View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9868_low_2 (Length: 640)
Name: NF9868_low_2
Description: NF9868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9868_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 604; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 1 - 620
Target Start/End: Complemental strand, 9431469 - 9430850
Alignment:
| Q |
1 |
aaagtcctaaagaaaccagacaagattgttcaatgtccaagatgcaaaagtttcgacacaaaattttgttatttcaacaactacaatgtcaatcaacctc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9431469 |
aaagtcctaaagaaaccagacaagattgttcaatgtccaagatgcaaaagtttcgacacaaaattttgttatttcaacaactacaatgtcaatcaacctc |
9431370 |
T |
|
| Q |
101 |
ggcatttttgtcggagttgtcacagatattggaccaacggtggaacaatgagaaacgttgctgttggtgcagggagacggaagaacaaacacatagcttc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9431369 |
ggcatttttgtcggagttgtcacagatattggaccaacggtggaacaatgagaaacgttgctgttggtgcagggagacggaagaacaaacacatagcttc |
9431270 |
T |
|
| Q |
201 |
tcaatatcgtcatatgattgtagcgtccgatggaattccgactgctagtttagaaaccaatgactcttctaggtaccaacatggctcaaatcttgaatct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9431269 |
tcaatatcgtcatatgattgtagcgtccgatggaattccgactgctagtttagaaaccaatgactcttctaggtaccaacatggctcaaatcttgaatct |
9431170 |
T |
|
| Q |
301 |
gctgcggtttttaggtgttcaaatgataatggtattgtcctaaaatttggtcgggaaaatgcctcgctcgatgaatccaaaggttcaatgcttaatctta |
400 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9431169 |
gctgcagtttttaggtgttcaaatgataatggtattgtcctaaaatttggtcgggaaaatgcctcgctcgatgaatccaaaggttcaatgcttaatctta |
9431070 |
T |
|
| Q |
401 |
tgaacaccaggagacatgttgatgcaagtggtaataattgtagagaaaatggagaggaagaatcatcattatgtgtatcgtctgtgacaaacggtcatac |
500 |
Q |
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| T |
9431069 |
tgaacaacaggagacatgttgatgcaagtggtaataattgtagagaaaatggagaggaagaaacatcgttatgtgtatcgtctgtgacaaacggtcatac |
9430970 |
T |
|
| Q |
501 |
tcgaggaaacgagttattcgaatccgaacagaataggtctaaacctatgcagagctaccctgcatcttcatggataattccaatgaatcaaagatggaac |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9430969 |
tcgaggaaacgagttattcgaatccgaacagaataggtctaaacctatgcagagctaccctgcatcttcatggataattccaatgaatcaaagatggaac |
9430870 |
T |
|
| Q |
601 |
aatgttacttctatggttca |
620 |
Q |
| |
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|||||||||||||||||||| |
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| T |
9430869 |
aatgttacttctatggttca |
9430850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 9424138 - 9423902
Alignment:
| Q |
1 |
aaagtcctaaagaaaccagacaagattgttcaatgtccaagatgcaaaagtttcgacacaaaattttgttatttcaacaactacaatgtcaatcaacctc |
100 |
Q |
| |
|
|||||| |||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||| |||||||| |
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| T |
9424138 |
aaagtcttaaagaaacccgacaaaattgttcaatgtccaagatgcaacagtttcgacacgaaattttgttatttcaataactataatgtcagtcaacctc |
9424039 |
T |
|
| Q |
101 |
ggcatttttgtcggagttgtcacagatattggaccaacggtggaacaatgagaaacgttgctgttggtgcagggagacggaagaacaaacacatagcttc |
200 |
Q |
| |
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||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||| || | |||||||||||||||| |||||| || |||||||| |
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| T |
9424038 |
ggcatttttgtcggaaatgtcatagatattggactgccggtggaaaaatgagaaacgttcctttcggtgcagggagacggaggaacaagcagatagcttc |
9423939 |
T |
|
| Q |
201 |
tcaatatcgtcatatgattgtagcgtccgatggaatt |
237 |
Q |
| |
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||||||||| || ||||||||||| |||| ||||||| |
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| T |
9423938 |
tcaatatcgccacatgattgtagcttccggtggaatt |
9423902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 295 - 620
Target Start/End: Complemental strand, 9423865 - 9423552
Alignment:
| Q |
295 |
gaatctgctgcggtttttaggtgttcaaatgataatggtattgtcctaaaatttggtcgggaaaatgcctcgctcgatgaatccaaaggttcaatgctta |
394 |
Q |
| |
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||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| |||||||| |||| || | ||| || ||| |
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| T |
9423865 |
gaatctgctgcggttttcaggtgctcaaataataatggtattgtcctaaaatttggtccggaaaatg------------aatctaacgattcgatcttta |
9423778 |
T |
|
| Q |
395 |
atcttatgaacaccaggagacatgttgatgcaagtggtaataattgtagagaaaatggagaggaagaatcatcattatgtgtatcgtctgtgacaaacgg |
494 |
Q |
| |
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||| || ||| || |||| |||||||||||| || ||| ||||||||||||||||| || |||||||||||||||||| |||| ||| |||||||||| |
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| T |
9423777 |
atcctaacaaccacaagagaaatgttgatgcaaatgctaacaattgtagagaaaatggggatgaagaatcatcattatgtctatcttctctgacaaacgg |
9423678 |
T |
|
| Q |
495 |
tcatactcgaggaaacgagttattcgaatccgaacagaataggtctaaacctatgcagagctaccctgcatcttcatggataattccaatgaatcaaaga |
594 |
Q |
| |
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| ||||||||||||||||||||| |||||||||||| |||||||| ||||| |||||| ||| |||||||||||||||| |||||| |||||||||| |
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| T |
9423677 |
ttatactcgaggaaacgagttatccgaatccgaacataataggtcaaaaccattgcagaattactctgcatcttcatggatgattccactgaatcaaagc |
9423578 |
T |
|
| Q |
595 |
tggaacaatgttacttctatggttca |
620 |
Q |
| |
|
| ||||||||||||||| |||||||| |
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| T |
9423577 |
ttgaacaatgttacttccatggttca |
9423552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 33751959 - 33752157
Alignment:
| Q |
8 |
taaagaaaccagacaagattgttcaatgtccaagatgcaaaagtttcgacacaaaattttgttatttcaacaactacaatgtcaatcaacctcggcattt |
107 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||| |||| ||||| || |||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
33751959 |
taaagaaaccagacaagattgttcagtgtccgcgatgcaacagttgggacaccaagttttgttatttcaacaactataatgtcaatcaacctcgacattt |
33752058 |
T |
|
| Q |
108 |
ttgtcggagttgtcacagatattggaccaacggtggaacaatgagaaacgttgctgttggtgcagggagacggaagaacaaacacatagcttctcaata |
206 |
Q |
| |
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|| || || || || |||||||| ||||||||||||||||| ||| | | ||||| ||||| |||||||| || ||| |||| |||||||| |
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| T |
33752059 |
ctgcaagaactgccaaaggtattggactgctggtggaacaatgagaaatgttccgataggtgctgggaggcggaagaataagcacctagcctctcaata |
33752157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 55 - 167
Target Start/End: Original strand, 31771804 - 31771916
Alignment:
| Q |
55 |
gacacaaaattttgttatttcaacaactacaatgtcaatcaacctcggcatttttgtcggagttgtcacagatattggaccaacggtggaacaatgagaa |
154 |
Q |
| |
|
||||| ||||||||||| |||||||| ||||||||||| || ||||| ||||||||| || ||||| ||||||||||| || ||||||||||||| |
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| T |
31771804 |
gacaccaaattttgttacttcaacaattacaatgtcaaccagcctcgtcatttttgtaagaaatgtcaaagatattggactgcaggaggaacaatgagaa |
31771903 |
T |
|
| Q |
155 |
acgttgctgttgg |
167 |
Q |
| |
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| ||| ||||||| |
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| T |
31771904 |
atgttcctgttgg |
31771916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 18198135 - 18198227
Alignment:
| Q |
9 |
aaagaaaccagacaagattgttcaatgtccaagatgcaaaagtttcgacacaaaattttgttatttcaacaactacaatgtcaatcaacctcg |
101 |
Q |
| |
|
||||||||||||| | |||||| |||||||||||||||||| |||||||||||||| || | |||||||||||| ||||| || ||||| |
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| T |
18198135 |
aaagaaaccagaccaagttgttccatgtccaagatgcaaaagcacggacacaaaattttgctactacaacaactacaacgtcaaacagcctcg |
18198227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 18230777 - 18230844
Alignment:
| Q |
25 |
attgttcaatgtccaagatgcaaaagtttcgacacaaaattttgttatttcaacaactacaatgtcaa |
92 |
Q |
| |
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||||||| ||||||||||||||||| | ||||||||||||||||| | ||||||||||| ||||| |
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| T |
18230777 |
attgttccctgtccaagatgcaaaagcatggacacaaaattttgttactataacaactacaacgtcaa |
18230844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 33 - 122
Target Start/End: Complemental strand, 4822328 - 4822239
Alignment:
| Q |
33 |
atgtccaagatgcaaaagtttcgacacaaaattttgttatttcaacaactacaatgtcaatcaacctcggcatttttgtcggagttgtca |
122 |
Q |
| |
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||||||||||||||| ||| | || || ||||||||||||||||| || ||||| || |||||||| | ||||||||| ||||||||| |
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| T |
4822328 |
atgtccaagatgcaagagtatggaaactaaattttgttatttcaataattacaacgttaatcaaccaagacatttttgtaagagttgtca |
4822239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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