View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9868_low_20 (Length: 345)

Name: NF9868_low_20
Description: NF9868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9868_low_20
NF9868_low_20
[»] chr6 (15 HSPs)
chr6 (1-335)||(1841765-1842099)
chr6 (1-206)||(6465429-6465635)
chr6 (14-128)||(1822166-1822280)
chr6 (12-206)||(6526468-6526663)
chr6 (1-128)||(1838893-1839020)
chr6 (113-206)||(6523489-6523583)
chr6 (227-308)||(6526266-6526347)
chr6 (227-287)||(6473246-6473306)
chr6 (227-335)||(1831992-1832100)
chr6 (32-112)||(1832542-1832622)
chr6 (227-322)||(6465213-6465308)
chr6 (2-203)||(6461698-6461900)
chr6 (227-280)||(6457295-6457348)
chr6 (239-321)||(1827222-1827304)
chr6 (227-259)||(13035945-13035977)
[»] chr1 (2 HSPs)
chr1 (113-206)||(35231421-35231515)
chr1 (113-182)||(35243061-35243130)


Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 1841765 - 1842099
Alignment:
Q  1 gaagaatttcatgatgaaattgtttcagctcttttgaaatatgttgaaggtttgaactcatctgaaataacaagaaattcttcttacttttatggtaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1841765 gaagaatttcatgatgaaattgtttcagctcttttgaaatatgttgaaggtttgaactcatctgaaataacaagaaattcttcttacttttatggtaaat 1841864  T
Q  101 ctattgctagggttgcatggttggcattgatagctgaagaggtttgtttccttgatgtgattccaaaagttagaaagtattttaaaaaaccattgagcat 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  1841865 ctattgctagggttgcatggtcggcattgatagctgaagaggtttgtttccttgatgtgattccaaaagttagaaagtattttaaaaaaacatcgagcat 1841964  T
Q  201 tggcttagcagaacttaaatgaccaatatcatttaagttactttctctatggaattgcattgcatgctaagattgatccaatttgggatacaaagtatga 300  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1841965 tggcttagcggaacttaaatgatcaatatcatttaagttactttctctatggaattgcattgcatgctaagattgatccaatttgggatacaaagtatga 1842064  T
Q  301 gactcaagtggattcactcatgaaggatttgatga 335  Q
    |||||||||||||||||||||||||||||| ||||    
T  1842065 gactcaagtggattcactcatgaaggattttatga 1842099  T

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Target: chr6; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 6465635 - 6465429
Alignment:
Q  1 gaagaatttcatgatgaaattgtttcagctcttttgaaatatgttgaaggtttgaactcatctgaaataacaagaaattcttcttacttttatggtaaat 100  Q
    ||||||| ||||||||| |||||||| | |||||||||| |||||||||||||||| || |||| |||| | |  ||||| |||||||||||||| || |    
T  6465635 gaagaatctcatgatgagattgtttccgttcttttgaaagatgttgaaggtttgaattcgtctgcaatagcgacgaattcgtcttacttttatggcaagt 6465536  T
Q  101 ctattgctagggttgcatggttggcattgatagctgaagaggtttgtttccttgatgtgattccaaaagttagaaagtattttaa-aaaaccattgagca 199  Q
      |||||||||| |||  ||||||| ||||| |||||||||||||||||||||||||||||||| ||| |||| |||| ||| ||  |||| |||||||     
T  6465535 tgattgctagggctgctaggttggctttgattgctgaagaggtttgtttccttgatgtgattccgaaaattaggaagtttttgaaggaaactattgagcc 6465436  T
Q  200 ttggctt 206  Q
    |||||||    
T  6465435 ttggctt 6465429  T

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Target: chr6; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 14 - 128
Target Start/End: Original strand, 1822166 - 1822280
Alignment:
Q  14 atgaaattgtttcagctcttttgaaatatgttgaaggtttgaactcatctgaaataacaagaaattcttcttacttttatggtaaatctattgctagggt 113  Q
    ||||||||||||||||| |||||||| ||||||||||| |||||||||||| |||||||| ||||||||||||||||||| ||||||  ||||| ||||     
T  1822166 atgaaattgtttcagctattttgaaagatgttgaaggtatgaactcatctgcaataacaacaaattcttcttacttttatagtaaattgattgccagggc 1822265  T
Q  114 tgcatggttggcatt 128  Q
    |||| ||||||||||    
T  1822266 tgcaaggttggcatt 1822280  T

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Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 6526663 - 6526468
Alignment:
Q  12 tgatgaaattgtttcagctcttttgaaatatgttgaaggtttgaactcatctgaaataacaagaaattcttcttacttttatggtaaatctattgctagg 111  Q
    |||||||||||||||||| ||||  ||  ||||||||||  |||| |||||   ||||| || ||| || ||||| |||||||| ||||  ||||| ||     
T  6526663 tgatgaaattgtttcagcactttgtaaggatgttgaaggactgaattcatcaacaataaaaacaaaatcatcttatttttatggaaaattgattgcaaga 6526564  T
Q  112 gttgcatggttggcattgatagctgaagaggtttgtttccttgatgtgattccaaaagttagaaagtattttaa-aaaaccattgagcattggctt 206  Q
    | |||| |  | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||| |||||||    
T  6526563 gctgcaagacttgcattgatagcggaagaggtttgtttccttgatgtgattccaaaagttagaaagtatttgaaggaaaccattgagccttggctt 6526468  T

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Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 1838893 - 1839020
Alignment:
Q  1 gaagaatttcatgatgaaattgtttcagctcttttgaaatatgttgaaggtttgaactcatctgaaataacaagaaattcttcttacttttatggtaaat 100  Q
    ||||||| | |||||||||||||||||||||| |||||| ||||||||   |||||||||| || ||||| |  ||||||||| ||||||||||||||||    
T  1838893 gaagaatctaatgatgaaattgtttcagctctcttgaaagatgttgaataattgaactcatttgcaataatatcaaattcttcatacttttatggtaaat 1838992  T
Q  101 ctattgctagggttgcatggttggcatt 128  Q
      ||||| |||| |||| ||||||||||    
T  1838993 tgattgccagggctgcaaggttggcatt 1839020  T

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Target: chr6; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 6523583 - 6523489
Alignment:
Q  113 ttgcatggttggcattgatagctgaagaggtttgtttccttgatgtgattccaaaagttagaaagtattttaaa-aaaccattgagcattggctt 206  Q
    ||||| ||||||| |  ||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||| | | |||||||| |||||||    
T  6523583 ttgcaaggttggcttcaatagctgaagaggtttgtttccttgatgtgatttcaaaagttaaaaagtatttgaaagagatcattgagccttggctt 6523489  T

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Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 227 - 308
Target Start/End: Complemental strand, 6526347 - 6526266
Alignment:
Q  227 tatcatttaagttactttctctatggaattgcattgcatgctaagattgatccaatttgggatacaaagtatgagactcaag 308  Q
    ||||||||| | ||||||||||||||||||||| ||| ||||||||||||||| ||||||| || ||||||| || ||||||    
T  6526347 tatcatttaggatactttctctatggaattgcagtgcttgctaagattgatcctatttggggtagaaagtataagtctcaag 6526266  T

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Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 227 - 287
Target Start/End: Original strand, 6473246 - 6473306
Alignment:
Q  227 tatcatttaagttactttctctatggaattgcattgcatgctaagattgatccaatttggg 287  Q
    ||||||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||||||    
T  6473246 tatcatttaggttactttctctatggaattgcagtgcttgctaagattgatccagtttggg 6473306  T

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Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 335
Target Start/End: Original strand, 1831992 - 1832100
Alignment:
Q  227 tatcatttaagttactttctctatggaattgcattgcatgctaagattgatccaatttgggatacaaagtatgagactcaagtggattcactcatgaagg 326  Q
    ||||||||| | |||||||||| |||||||||| ||| ||| ||||||||||||||||||| || | ||||| || ||||||   ||||||||||  |||    
T  1831992 tatcatttaggatactttctctttggaattgcagtgcttgcaaagattgatccaatttggggtagagagtataagcctcaagcctattcactcattgagg 1832091  T
Q  327 atttgatga 335  Q
    |||| ||||    
T  1832092 attttatga 1832100  T

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Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 1832542 - 1832622
Alignment:
Q  32 ttttgaaatatgttgaaggtttgaactcatctgaaataacaagaaattcttcttacttttatggtaaatctattgctaggg 112  Q
    |||||||| |||||||||||||||||||||||| ||||||||  |  ||||| ||||||||| ||||||  ||||||||||    
T  1832542 ttttgaaagatgttgaaggtttgaactcatctgcaataacaactatatcttcatacttttatcgtaaataaattgctaggg 1832622  T

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Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 322
Target Start/End: Complemental strand, 6465308 - 6465213
Alignment:
Q  227 tatcatttaagttactttctctatggaattgcattgcatgctaagattgatccaatttgggatacaaagtatgagactcaagtggattcactcatg 322  Q
    ||||||||| | ||||||||||||||||||||  ||| ||| ||||||||||||||||||| ||  |||||| || ||||||   |||||||||||    
T  6465308 tatcatttaggatactttctctatggaattgctgtgcttgcaaagattgatccaatttggggtaggaagtataagcctcaagcttattcactcatg 6465213  T

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Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 203
Target Start/End: Original strand, 6461698 - 6461900
Alignment:
Q  2 aagaatttcatgatgaaattgtttcagctcttttgaaatatgttgaaggtttgaactcatctgaaataacaagaaattcttcttacttttatggtaaatc 101  Q
    |||||| || ||||||||| |||||| | ||||| ||| ||||||| ||| |  | |||||  ||||||| | |||   |||||||| |||||||||||     
T  6461698 aagaatctcgtgatgaaatcgtttcatcacttttaaaagatgttgagggtctagattcatcaaaaataaccacaaaagattcttactcttatggtaaatt 6461797  T
Q  102 tattgctagggttgcatggttggcattgatagctgaagaggtttgtttccttgatgtgattccaaaagttagaaagtattttaaa-aaaccattgagcat 200  Q
     ||||  ||||  ||  |||| |||||||||||||||||||||| || | | |||||||||||||| ||||  |||| ||| ||| |||||||||||| |    
T  6461798 gattggaagggcggcgaggtttgcattgatagctgaagaggtttcttacttagatgtgattccaaaggttaagaagtttttaaaagaaaccattgagcct 6461897  T
Q  201 tgg 203  Q
    |||    
T  6461898 tgg 6461900  T

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Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 6457348 - 6457295
Alignment:
Q  227 tatcatttaagttactttctctatggaattgcattgcatgctaagattgatcca 280  Q
    ||||||||| | ||||||||||||||||||||| ||| ||| ||||||||||||    
T  6457348 tatcatttaggatactttctctatggaattgcagtgcttgcaaagattgatcca 6457295  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 321
Target Start/End: Original strand, 1827222 - 1827304
Alignment:
Q  239 tactttctctatggaattgcattgcatgctaagattgatccaatttgggatacaaagtatgagactcaagtggattcactcat 321  Q
    |||||||||||| |||||||| ||| ||| ||||||||| ||||||||| || ||| ||| || ||||||   ||||||||||    
T  1827222 tactttctctatcgaattgcagtgcttgcaaagattgattcaatttggggtagaaaatataagcctcaagcctattcactcat 1827304  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 259
Target Start/End: Original strand, 13035945 - 13035977
Alignment:
Q  227 tatcatttaagttactttctctatggaattgca 259  Q
    ||||||||| |||||||||||||||||||||||    
T  13035945 tatcatttaggttactttctctatggaattgca 13035977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 35231421 - 35231515
Alignment:
Q  113 ttgcatggttggcattgatagctgaagaggtttgtttccttgatgtgattccaaaagttagaaagtattttaaa-aaaccattgagcattggctt 206  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||| | | |||||||| |||||||    
T  35231421 ttgcaaggttggctttgatagctgaagaggtttgtttccttgatgtgattccaaaagttaagaagtatttgaaagagatcattgagccttggctt 35231515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 35243061 - 35243130
Alignment:
Q  113 ttgcatggttggcattgatagctgaagaggtttgtttccttgatgtgattccaaaagttagaaagtattt 182  Q
    |||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||  ||||||||    
T  35243061 ttgcatagttggctttgatagctgaagaggtttgtttctttgatgtgattccaaaagttaagaagtattt 35243130  T

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