View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9868_low_21 (Length: 344)

Name: NF9868_low_21
Description: NF9868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9868_low_21
NF9868_low_21
[»] chr8 (2 HSPs)
chr8 (1-315)||(21604267-21604581)
chr8 (4-127)||(21609501-21609624)
[»] chr3 (8 HSPs)
chr3 (1-315)||(38028279-38028593)
chr3 (155-315)||(38033313-38033473)
chr3 (1-127)||(38033501-38033627)
chr3 (5-127)||(38039783-38039905)
chr3 (1-46)||(50910271-50910316)
chr3 (185-315)||(50910454-50910577)
chr3 (1-104)||(38036511-38036620)
chr3 (157-315)||(38036314-38036470)


Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 21604581 - 21604267
Alignment:
Q  1 tgacaaatttattcaggaccaaattatctgttattatttatttctaatcataataacagaatgcattcaataactcaattagctcctatgtgcttgtatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21604581 tgacaaatttattcaggaccaaattatctgttattatttatttctaatcataataacagaatgcattcaataactcaattagctcctatgtgcttgtatt 21604482  T
Q  101 tataaatgataaaacagatgattccttnnnnnnnnnnnnnnnnnnnnnnnnttacgaacaatatctaaattttcttgagttattatgatgacataagggt 200  Q
    |||||||||||||||||| ||||||||                        |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21604481 tataaatgataaaacagacgattccttaaaagaaagaaaaagaaaaagaaattacgaacaatatctaaattttcttgagttattatgatgacataagggt 21604382  T
Q  201 atttcctgtaagaaatgtcgagcttccaatattcctgcaaacttctctggcctaataataaaacattcagccaaattataatagttgataggttatctta 300  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21604381 atttcctgtaagaaatatcgagcttccaatattcctgcaaatttctctggcctaataataaaacattcagccaaattataatagttgataggttatctta 21604282  T
Q  301 gatccaagctcacaa 315  Q
    |||| ||||||||||    
T  21604281 gatctaagctcacaa 21604267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 21609624 - 21609501
Alignment:
Q  4 caaatttattcaggaccaaattatctgttattatttatttctaatcataataacagaatgcattcaataactcaattagctcctatgtgcttgtatttat 103  Q
    |||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| || |||||||| |||||||  || ||||||  |||| |||||||    
T  21609624 caaattcattcaggaacaaattatttgttattatttatttctaatcataatgacaaaaggcattcaacaactcaacgagttcctatacgcttctatttat 21609525  T
Q  104 aaatgataaaacagatgattcctt 127  Q
    |||| ||||||||| |||||||||    
T  21609524 aaattataaaacaggtgattcctt 21609501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 38028593 - 38028279
Alignment:
Q  1 tgacaaatttattcaggaccaaattatctgttattatttatttctaatcataataacagaatgcattcaataactcaattagctcctatgtgcttgtatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38028593 tgacaaatttattcaggaccaaattatctgttattatttatttctaatcataataacagaatgcattcaataactcaattagctcctatgtgcttgtatt 38028494  T
Q  101 tataaatgataaaacagatgattccttnnnnnnnnnnnnnnnnnnnnnnnnttacgaacaatatctaaattttcttgagttattatgatgacataagggt 200  Q
    |||||||||||||||||| ||||||||                        |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38028493 tataaatgataaaacagacgattccttaaaagaaagaaaaagaaaaagaaattacgaacaatatctaaattttcttgagttattatgatgacataagggt 38028394  T
Q  201 atttcctgtaagaaatgtcgagcttccaatattcctgcaaacttctctggcctaataataaaacattcagccaaattataatagttgataggttatctta 300  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38028393 atttcctgtaagaaatatcgagcttccaatattcctgcaaatttctctggcctaataataaaacattcagccaaattataatagttgataggttatctta 38028294  T
Q  301 gatccaagctcacaa 315  Q
    |||| ||||||||||    
T  38028293 gatctaagctcacaa 38028279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 155 - 315
Target Start/End: Complemental strand, 38033473 - 38033313
Alignment:
Q  155 cgaacaatatctaaattttcttgagttattatgatgacataagggtatttcctgtaagaaatgtcgagcttccaatattcctgcaaacttctctggccta 254  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38033473 cgaacaatatctaaattttcttgagttataatgatgacataagggtatctcctgtaagaaatgtcgagcttccaatattcctgcaaatttctctggccta 38033374  T
Q  255 ataataaaacattcagccaaattataatagttgataggttatcttagatccaagctcacaa 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38033373 ataataaaacattcagccaaattataatagttgataggttatcttagatctaagctcacaa 38033313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 38033627 - 38033501
Alignment:
Q  1 tgacaaatttattcaggaccaaattatctgttattatttatttctaatcataataacagaatgcattcaataactcaattagctcctatgtgcttgtatt 100  Q
    ||||||||| |||||| |||||||||| |||||||||||||||||||| ||||| ||||||| |||||||||||||||| ||||||||||||||| ||||    
T  38033627 tgacaaattcattcagaaccaaattatttgttattatttatttctaataataatgacagaatccattcaataactcaatcagctcctatgtgcttctatt 38033528  T
Q  101 tataaatgataaaacagatgattcctt 127  Q
    ||||||| ||||||| | |||||||||    
T  38033527 tataaattataaaactggtgattcctt 38033501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 38039905 - 38039783
Alignment:
Q  5 aaatttattcaggaccaaattatctgttattatttatttctaatcataataacagaatgcattcaataactcaattagctcctatgtgcttgtatttata 104  Q
    ||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| || |||||||| |||||||  || ||||||  |||| ||||||||    
T  38039905 aaattcattcaggaacaaattatttgttattatttatttctaatcataatgacaaaaggcattcaacaactcaacgagttcctatacgcttctatttata 38039806  T
Q  105 aatgataaaacagatgattcctt 127  Q
    ||| ||||||||| |||||||||    
T  38039805 aattataaaacaggtgattcctt 38039783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 50910271 - 50910316
Alignment:
Q  1 tgacaaatttattcaggaccaaattatctgttattatttatttcta 46  Q
    ||||||||| |||||||| |||||||| ||||||||||||||||||    
T  50910271 tgacaaattcattcaggaacaaattatttgttattatttatttcta 50910316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 315
Target Start/End: Original strand, 50910454 - 50910577
Alignment:
Q  185 atgatgacataagggtatttcctgtaagaaatgtcgagcttccaatattcctgcaaacttctctggcctaataataaaacattcagccaaattataatag 284  Q
    ||||||||||||| | || | ||||||| ||| ||||||| | |||||||||||||| ||||  ||||||||   |||||||||||||||| || | |||    
T  50910454 atgatgacataagagaatgtgctgtaagcaatatcgagct-cgaatattcctgcaaatttct--ggcctaat---aaaacattcagccaaactaaagtag 50910547  T
Q  285 ttgataggttatcttagatccaagctcacaa 315  Q
    |||||| | |||||| |||| ||||||||||    
T  50910548 ttgataag-tatcttggatctaagctcacaa 50910577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 38036620 - 38036511
Alignment:
Q  1 tgacaaatttattcaggaccaaattatctgttattatttatttctaatca------taataacagaatgcattcaataactcaattagctcctatgtgct 94  Q
    ||||||||| |||||||| |||||||| |||||| ||||  |||||||||      |||| | ||||| ||||||| ||||||||| | |||||| ||||    
T  38036620 tgacaaattcattcaggaacaaattatttgttataatttcattctaatcataatcataatgaaagaatacattcaacaactcaattggatcctatatgct 38036521  T
Q  95 tgtatttata 104  Q
    | ||||||||    
T  38036520 tctatttata 38036511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 315
Target Start/End: Complemental strand, 38036470 - 38036314
Alignment:
Q  157 aacaatatctaaattttcttg---agttattatgatgacataagggtatttcctgtaagaaatgtcgagcttccaatattcctgcaaacttctctggcct 253  Q
    |||||||||||||||| ||||     |||| ||||||| |||||||||| | ||||||| | | |||||  || |||||||||||||| ||||||| |      
T  38036470 aacaatatctaaatttccttggttttttataatgatgagataagggtatgtgctgtaagcagtatcgag-atcgaatattcctgcaaatttctctgac-- 38036374  T
Q  254 aataataaaacattcagccaaattataatagttgataggttatcttagatccaagctcacaa 315  Q
     ||||||| ||||||||||||| ||| |||||  ||| | |||||| |||| ||||||||||    
T  38036373 -ataataacacattcagccaaactat-atagtgtataagctatcttggatcaaagctcacaa 38036314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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